View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20763_low_18 (Length: 239)
Name: NF20763_low_18
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20763_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 46765662 - 46765882
Alignment:
| Q |
1 |
catgatatatgatataattttattaaactgttacaacctacgaagacatgaacatttttctttttataggtgtgaccgtattctatggtatggagaagga |
100 |
Q |
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| T |
46765662 |
catgatatatgatataattttattaaactgttacaacctacgaagacatgaacatttttctttttataggtgtgaccgtattctatggtatggagaagga |
46765761 |
T |
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| Q |
101 |
ctccatcaattgtcttatgttcgcggtgaatcaagattttcagaccaccgacctgtttatggcatattttgggctgaggttgagtcacctcacggaaaat |
200 |
Q |
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| T |
46765762 |
ctccatcaattgtcttatgttcgcggtgaatcaagattttcagaccaccgacctgtttatggcatattttgggctgaggttgagtcacctcacggaaaat |
46765861 |
T |
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| Q |
201 |
tgaagaaaagtatgagttgtt |
221 |
Q |
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| T |
46765862 |
tgaagaaaagtatgagttgtt |
46765882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 1086064 - 1086220
Alignment:
| Q |
65 |
tataggtgtgaccgtattctatggtatggagaaggactccatcaattgtcttatgttcgcggtgaatcaagattttcagaccaccgacctgtttatggca |
164 |
Q |
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| T |
1086064 |
tataggtgtgaccgtattttgtggcatggagaaggtctacgtcaaatatcttacgtacgcggagaatcgagattttcagaccacagaccggtttatggct |
1086163 |
T |
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| Q |
165 |
tattttgggctgaggttgagtcacctcacggaaaattgaagaaaagtatgagttgtt |
221 |
Q |
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| T |
1086164 |
tattttgggccgaggttgagtcaaaccatggaaaattgaagaaaagtatgagctgtt |
1086220 |
T |
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