View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20763_low_2 (Length: 490)
Name: NF20763_low_2
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20763_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 47366808 - 47367291
Alignment:
| Q |
1 |
tgggggcatgacatggatgtgccagagatgatgttgaagctcacatgccttgtgtcaactgacaagccagttggtccaactttcccactccatccagcta |
100 |
Q |
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| T |
47366808 |
tgggggcatgacatggatgtgccagagatgatgttgaagctcacatgccttgtgtcaactgacaagccagttggtccaactttcccactccatccagcta |
47366907 |
T |
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| Q |
101 |
gaatgttgactcctggagctatcaggtctggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatggttg |
200 |
Q |
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| T |
47366908 |
gaatgttgactcctggagctatcaggtcgggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatggttg |
47367007 |
T |
|
| Q |
201 |
aaccccgaaccgggtaccgccaaatgcaattttagcagttggattgggagctgaagaagcatacttctttatttcattgcttgctttctctcccaaagct |
300 |
Q |
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| T |
47367008 |
aaccccgaaccgggtaccgccaaatgcaattttagcagttggattgggagctgaagaagcatacttctttatttcattgcttgctttctctcccaaagct |
47367107 |
T |
|
| Q |
301 |
gctgcagggaggagaaaggagtcagcaactagctcttcaccataatcttggttgtttgctaaaatcatcccaattcctcctgcgcgtttgaccaccaaac |
400 |
Q |
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| T |
47367108 |
gctgcagggaggagaaaggagtcagcaactagctcttcaccataatcttggttgtttgctaaaatcatcccaattcctcctgcgcgtttgaccaccaaac |
47367207 |
T |
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| Q |
401 |
tcttttcagctctaggatttcctcctcggtcacatatcactatttttcctgaaactttgctaggaatcaaactatctgtgctgc |
484 |
Q |
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| T |
47367208 |
tcttttcagctctaggatttcctcctcggtcacatatcactatttttcctgaaactttgctaggaatcaaactatctgtgctgc |
47367291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 5375670 - 5375564
Alignment:
| Q |
97 |
gctagaatgttgactcctggagctatcaggtctggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatg |
196 |
Q |
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|||| |||||| || ||||||||||| | || |||||||| || |||||||| | ||||||||||||| || ||||| ||||| |||||||| || | |
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| T |
5375670 |
gctaaaatgtttacacctggagctattaaatccggtttgagaatctttggtgttaaactatttggtcctcttgaactgaatgctgctaccactggtgaag |
5375571 |
T |
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| Q |
197 |
gttgaac |
203 |
Q |
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| T |
5375570 |
gttgaac |
5375564 |
T |
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