View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20763_low_4 (Length: 429)
Name: NF20763_low_4
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20763_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 2123035 - 2123384
Alignment:
| Q |
1 |
tgagacaaatcgagtgttgggtttacgtgctcctgaggttattaatgttcaaagaagaagaacactacatgaattgccacactttgacggctgggatgat |
100 |
Q |
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| T |
2123035 |
tgagataaatagagtgttgggtttacgtgctcctgaggttattaatgttcaaagaagaagaacactacatgaattgccacactttgatggctgggatgat |
2123134 |
T |
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| Q |
101 |
cttgtggctgggtttcaaatctaaaatgccactcaagaaggtattcacactcctatcaatcttgtatgaaaatgaagtgattagtgctggtgagttaatt |
200 |
Q |
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| T |
2123135 |
cttgtgtctgggtttcaaatctgaaatgccactcaagaaggtatttacactactatcaatcttgtatgaaaatgaagtgattagttctggtgagttaatt |
2123234 |
T |
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| Q |
201 |
gcttcaaacgttacggaaatcgtgaattccaaacat-----accacactgggacataactgcctcataaatctgctttgtgaacaaagagaaggtaccag |
295 |
Q |
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| T |
2123235 |
gcttcaaactttaaggaaatcgtggattccaaacatactacactacactgggacataactgtctgataaatctgctttgtgaac-aagagaaggttcaag |
2123333 |
T |
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| Q |
296 |
tagaagcaaatgatatttttgtgaattcaaaggagcctattaaatgacaaa |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2123334 |
tagaagcaaatgatatttttgtgaattcaaaggagcctattaaatgacaaa |
2123384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 2095048 - 2095398
Alignment:
| Q |
1 |
tgagacaaatcgagtgttgggtttacgtgctcctgaggttattaatgttcaaagaagaagaacactacatgaattgccacactttgacggctgggatgat |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
2095048 |
tgagataaatcgagtgttgggtttacgtgctcctgaggttattaatgttcaaagaagaagaacactacatgaattgccaaactttgacggctgggacgat |
2095147 |
T |
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| Q |
101 |
cttgtggctgggtttcaaatctaaaatgccactcaagaaggtattcacac--tcctat----caatcttgtatgaaaatgaagtgattagtgctggtgag |
194 |
Q |
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| T |
2095148 |
cttgtggctgggttgcgcatctgaaatgccactcaagaagttattcacacactcctatatatcaatcttgtatgaaaatgaagtgattagtgctggtgag |
2095247 |
T |
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| Q |
195 |
ttaattgcttcaaacgttacggaaatcgtgaattccaaacataccacactgggacataactgcctcataaatctgctttgtgaacaaagagaaggtacca |
294 |
Q |
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||||||||||||||| ||| |||||||||| ||||||||||||| ||||| ||||||||||| || ||||||||||||||||||| |||||||||| | |
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| T |
2095248 |
ttaattgcttcaaactttaaggaaatcgtggattccaaacatactacactaggacataactgtctgataaatctgctttgtgaac-aagagaaggttcat |
2095346 |
T |
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| Q |
295 |
gtagaagcaaatgatatttttgtgaattcaaaggagcctattaaatgacaaa |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2095347 |
gtagaagcaaatgatatttttgtgaattcaaaggagcctattaaatgacaaa |
2095398 |
T |
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