View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20763_low_5 (Length: 423)
Name: NF20763_low_5
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20763_low_5 |
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| [»] chr4 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 170 - 423
Target Start/End: Complemental strand, 29982263 - 29982010
Alignment:
| Q |
170 |
agagactaaatagactgttcactaaaataataataaatcatgtctttgaattccttgtgaaaagtgtaggtactgagtgatcaagcatttgcaatatgtg |
269 |
Q |
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| T |
29982263 |
agagactaaatagactgttcactaaaataataataaatcatgtctttgaattccttgtgaaaagtgtaggtactgagtgatcaagcatttgcaatatgtg |
29982164 |
T |
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| Q |
270 |
ttgtaatggcactggtcacaactttcattaccacaccaatagtgatggcagtgtataaaccagctaggagaggatcaccatacatgcataaaacgattca |
369 |
Q |
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| T |
29982163 |
ttgtaatggcactggtcacaactttcattaccacaccaatagtgatggcagtgtataaaccagctaggagaggatcaccatacatgcataaaacgattca |
29982064 |
T |
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| Q |
370 |
gcgcaaagatccagacacggagcttaggatactagcttgtttccacagcaccta |
423 |
Q |
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| T |
29982063 |
gcgcaaagatccagacacggagcttaggatactagcttgtttccacagcaccta |
29982010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 29982498 - 29982660
Alignment:
| Q |
16 |
tcttatttagtccataaactatatggaaataataaatatcatatgaaatattttatgttagacaatacattatttgaaatatatctcattagttaccaat |
115 |
Q |
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| T |
29982498 |
tcttatttagtccataaactatatggaaataataaatattatatgaaatcttttatgttagacaatacattatttgaaatatatctcattagttacctat |
29982597 |
T |
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| Q |
116 |
atcctgtgtcactatataacgacaaagaccaatttaacggatttcatataatttagagactaa |
178 |
Q |
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| T |
29982598 |
atcctgtgtcactatataacgacaaagaccaatttaacggatttcatataatttagatactaa |
29982660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 8155967 - 8156023
Alignment:
| Q |
364 |
gattcagcgcaaagatccagacacggagcttaggatactagcttgtttccacagcac |
420 |
Q |
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| T |
8155967 |
gattcagcgcaaagatccagacaccgagcttaggatactagcttgtttccatagcac |
8156023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 51404505 - 51404616
Alignment:
| Q |
237 |
aggtactgagtgatcaagcatttgcaatatgtgttgtaatggcactggtcacaactttcattaccacaccaatagtgatggcagtgtataaaccagctag |
336 |
Q |
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| T |
51404505 |
aggtactaaatgaccaagcatttgcaatttgtgttcttatggcattattcacaaccttcatcaccaccccaatagtgatggcagtatacaaaccagctcg |
51404604 |
T |
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| Q |
337 |
gagaggatcacc |
348 |
Q |
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|||||| |||| |
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| T |
51404605 |
aagaggagcacc |
51404616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 365 - 423
Target Start/End: Original strand, 47370013 - 47370071
Alignment:
| Q |
365 |
attcagcgcaaagatccagacacggagcttaggatactagcttgtttccacagcaccta |
423 |
Q |
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| T |
47370013 |
attcagcgcaaagatccagacgcggagcttaggatactagcttgtttccacagcaccta |
47370071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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