View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20763_low_9 (Length: 313)
Name: NF20763_low_9
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20763_low_9 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 68 - 291
Target Start/End: Complemental strand, 2591518 - 2591295
Alignment:
| Q |
68 |
ctttgtaattaagattcttaaataaaaataaaaccgtgatttataagcatacatttagagaaaaacttgactagaattttgttggttgtgaaaaaggatg |
167 |
Q |
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| T |
2591518 |
ctttgtaattaagattcttaaataaaaataaaaccgtgatttataagcatacatttagagaaaaacttgactagaattttgttggttgtgaaaaaggatg |
2591419 |
T |
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| Q |
168 |
tatgctaaacaaacactgaaaacggacgagaatatatttgaactgacagaattgccatcttaacttccctaaaactatagattgcttcattaataaataa |
267 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591418 |
tatgctaaacaaacactgaaaacggacgagaataaatttgaaccgacagaattgccatcttaacttccctaaaactatagattgcttcattaataaataa |
2591319 |
T |
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| Q |
268 |
tatctgttcttatgtttaatttta |
291 |
Q |
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|||||||||||||||||||||||| |
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| T |
2591318 |
tatctgttcttatgtttaatttta |
2591295 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 26538633 - 26538603
Alignment:
| Q |
283 |
ttaattttaggcttaattacacttttggtcc |
313 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
26538633 |
ttaattttaggcttaattacacttttggtcc |
26538603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 48248145 - 48248117
Alignment:
| Q |
285 |
aattttaggcttaattacacttttggtcc |
313 |
Q |
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| T |
48248145 |
aattttaggcttaattacacttttggtcc |
48248117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 11444980 - 11445008
Alignment:
| Q |
285 |
aattttaggcttaattacacttttggtcc |
313 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11444980 |
aattttaggcttaattacacttttggtcc |
11445008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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