View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_high_11 (Length: 574)

Name: NF20764_high_11
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_high_11
NF20764_high_11
[»] chr3 (65 HSPs)
chr3 (1-564)||(4141957-4142520)
chr3 (1-545)||(3754268-3754815)
chr3 (1-559)||(4157769-4158330)
chr3 (191-402)||(3745866-3746074)
chr3 (201-401)||(2678385-2678582)
chr3 (203-400)||(2686299-2686496)
chr3 (290-392)||(803213-803312)
chr3 (336-407)||(2456249-2456320)
chr3 (334-392)||(2696727-2696785)
chr3 (334-414)||(989394-989474)
chr3 (339-411)||(9587161-9587233)
chr3 (334-400)||(968669-968735)
chr3 (334-404)||(1931137-1931207)
chr3 (336-398)||(2644351-2644413)
chr3 (336-398)||(2659141-2659203)
chr3 (334-395)||(1007459-1007520)
chr3 (334-395)||(1022487-1022548)
chr3 (336-385)||(13498224-13498273)
chr3 (336-392)||(2442039-2442095)
chr3 (338-413)||(2459277-2459352)
chr3 (337-404)||(2631358-2631425)
chr3 (336-411)||(7334215-7334290)
chr3 (334-401)||(7432040-7432107)
chr3 (334-404)||(1940562-1940632)
chr3 (336-413)||(956381-956458)
chr3 (334-387)||(1891064-1891117)
chr3 (338-403)||(23197014-23197079)
chr3 (336-404)||(2476634-2476702)
chr3 (336-404)||(7942485-7942553)
chr3 (336-387)||(771499-771550)
chr3 (336-411)||(783775-783850)
chr3 (336-387)||(7324431-7324482)
chr3 (336-387)||(37753345-37753396)
chr3 (336-387)||(43991960-43992011)
chr3 (333-395)||(1936972-1937034)
chr3 (336-398)||(2502148-2502210)
chr3 (335-385)||(9608346-9608396)
chr3 (346-396)||(44001605-44001655)
chr3 (338-383)||(997578-997623)
chr3 (338-383)||(1013968-1014013)
chr3 (339-411)||(14888588-14888660)
chr3 (336-387)||(754609-754660)
chr3 (336-387)||(1437996-1438046)
chr3 (337-387)||(2492083-2492133)
chr3 (336-390)||(12133097-12133151)
chr3 (338-388)||(23230981-23231031)
chr3 (44-90)||(23231261-23231307)
chr3 (336-385)||(9561987-9562036)
chr3 (44-97)||(23235146-23235199)
chr3 (337-389)||(768327-768379)
chr3 (60-112)||(2678671-2678723)
chr3 (348-404)||(13479590-13479646)
chr3 (348-387)||(746383-746422)
chr3 (336-387)||(7430536-7430587)
chr3 (336-387)||(9565829-9565880)
chr3 (346-401)||(37757722-37757777)
chr3 (137-175)||(3745803-3745841)
chr3 (338-388)||(7398178-7398228)
chr3 (337-387)||(7442977-7443027)
chr3 (338-388)||(23234865-23234915)
chr3 (43-112)||(2686584-2686653)
chr3 (346-387)||(7427605-7427646)
chr3 (440-472)||(2686227-2686259)
chr3 (337-389)||(9594622-9594674)
chr3 (346-386)||(12218037-12218077)
[»] chr5 (19 HSPs)
chr5 (78-564)||(11081555-11082047)
chr5 (334-395)||(23766854-23766915)
chr5 (334-395)||(23816702-23816763)
chr5 (334-404)||(23769629-23769699)
chr5 (334-404)||(23819477-23819547)
chr5 (334-399)||(23732165-23732230)
chr5 (334-386)||(3181715-3181767)
chr5 (334-404)||(23861009-23861079)
chr5 (336-385)||(20292995-20293044)
chr5 (334-404)||(23764243-23764313)
chr5 (334-404)||(23814076-23814146)
chr5 (336-385)||(20301443-20301492)
chr5 (336-385)||(20305856-20305905)
chr5 (336-385)||(20310260-20310309)
chr5 (334-401)||(1427679-1427746)
chr5 (336-386)||(6401767-6401817)
chr5 (334-388)||(41973469-41973523)
chr5 (437-477)||(1427603-1427643)
chr5 (44-76)||(6402077-6402109)
[»] scaffold0044 (1 HSPs)
scaffold0044 (335-404)||(89142-89211)
[»] chr1 (16 HSPs)
chr1 (335-404)||(51381438-51381507)
chr1 (335-377)||(23896147-23896189)
chr1 (336-385)||(24629213-24629262)
chr1 (334-386)||(24513054-24513106)
chr1 (335-378)||(24246506-24246549)
chr1 (335-386)||(25478864-25478915)
chr1 (335-385)||(24242859-24242909)
chr1 (334-375)||(24634817-24634858)
chr1 (335-388)||(51858605-51858658)
chr1 (333-385)||(51782796-51782848)
chr1 (336-386)||(24626773-24626823)
chr1 (346-388)||(51407558-51407600)
chr1 (348-389)||(25609375-25609416)
chr1 (333-386)||(25610967-25611020)
chr1 (335-388)||(51756749-51756802)
chr1 (335-388)||(51854946-51854999)
[»] chr4 (6 HSPs)
chr4 (339-404)||(22672110-22672175)
chr4 (334-413)||(20019746-20019825)
chr4 (342-397)||(55419788-55419843)
chr4 (336-386)||(11032910-11032960)
chr4 (348-392)||(20016180-20016224)
chr4 (57-112)||(20020041-20020096)
[»] chr2 (12 HSPs)
chr2 (336-388)||(36577366-36577418)
chr2 (336-411)||(7160730-7160805)
chr2 (339-410)||(7168667-7168738)
chr2 (336-410)||(7156169-7156243)
chr2 (336-404)||(7174356-7174424)
chr2 (345-390)||(6538843-6538888)
chr2 (335-404)||(33038159-33038228)
chr2 (336-403)||(11237693-11237760)
chr2 (337-404)||(33020314-33020381)
chr2 (336-387)||(33026657-33026708)
chr2 (346-409)||(34560895-34560958)
chr2 (348-392)||(20538030-20538074)
[»] scaffold0015 (2 HSPs)
scaffold0015 (335-386)||(32330-32381)
scaffold0015 (335-386)||(40382-40433)
[»] chr7 (6 HSPs)
chr7 (335-386)||(1421170-1421221)
chr7 (336-413)||(1078134-1078211)
chr7 (335-404)||(39298976-39299045)
chr7 (193-317)||(1078245-1078369)
chr7 (340-389)||(3927063-3927112)
chr7 (346-387)||(27755733-27755774)
[»] chr8 (1 HSPs)
chr8 (334-403)||(19727879-19727948)
[»] chr6 (15 HSPs)
chr6 (337-396)||(24417477-24417536)
chr6 (338-404)||(19119065-19119131)
chr6 (338-404)||(19126359-19126425)
chr6 (340-397)||(176338-176395)
chr6 (340-385)||(9819831-9819876)
chr6 (339-395)||(370777-370833)
chr6 (346-397)||(1442098-1442149)
chr6 (340-385)||(9703888-9703933)
chr6 (340-385)||(9825517-9825562)
chr6 (335-388)||(17368365-17368418)
chr6 (340-390)||(7564748-7564798)
chr6 (335-388)||(4183000-4183053)
chr6 (335-388)||(4743844-4743897)
chr6 (340-388)||(1459540-1459588)
chr6 (340-388)||(1470922-1470970)
[»] scaffold0200 (1 HSPs)
scaffold0200 (334-388)||(777-831)
[»] scaffold1004 (1 HSPs)
scaffold1004 (337-384)||(2144-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (337-384)||(4639-4686)


Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 65)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 4142520 - 4141957
Alignment:
Q  1 ttcttgactaccaatttcttgataaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcagga 100  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142520 ttcttgactaccaatttcttgatgaggattatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcagga 4142421  T
Q  101 gtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcgtcggaatgtccacgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||    
T  4142420 gtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcattggaatgtccatgc 4142321  T
Q  201 tttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttt 300  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142320 tttattgtttcttttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttt 4142221  T
Q  301 tgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142220 tgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctta 4142121  T
Q  401 catgagagatccttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaagtatgattttgacttgaatttgatt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142120 catgagagatccttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaagtatgattttgacttgaatttgatt 4142021  T
Q  501 ctttacaatcccaggacgggtactttcaaggctactaattttaaacgaattcctgaagtctgtg 564  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4142020 ctttacaatcccaggaggggtactttcaaggctactaattttaaacgaattcctgaagtctgtg 4141957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 3754268 - 3754815
Alignment:
Q  1 ttcttgactaccaatttcttgataaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcagga 100  Q
    |||||| ||||| | |||||||| ||||| |||| ||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  3754268 ttcttgcctacctagttcttgatgaggattataggttttttaacaaaaataaagtaaaggttcatactttgggtactaatatatggagaaccatccagga 3754367  T
Q  101 gtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcgtcggaatgtccacgc 200  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  3754368 ctatccttttggaggtcttcctgttccagttatgaagggggaatttgtgagtggcacaattaattggttgttgtccgaagaatcatcggaatgtccacgc 3754467  T
Q  201 tttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttt 300  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||||| |||| ||||||    
T  3754468 tttattgtttcttttgatttggcaaaggagtcatatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacatgtcggctttgagtgttt 3754567  T
Q  301 tgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctta 400  Q
    |||||||||||||||||||   |||||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  3754568 tgagggattgcttgtgcgt---gacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttactattccttg 3754664  T
Q  401 catgagagatccttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaagt------atgattttgacttgaat 494  Q
    |||||||||||||||||||||  |||||  ||| | |||| | |||  |||||||||||||||||||||||||||||      ||||| |||||||||||    
T  3754665 catgagagatccttctaaacccgaggtctttgcgaaggcattgtatacttttgaggatgatcaagtgttgctgaagtttatgaatgatattgacttgaat 3754764  T
Q  495 ttgattctttacaatcccaggacgggtactttcaaggctactaattttaaa 545  Q
    ||| |||||||||| |||||||  ||||| || ||||||| ||| ||||||    
T  3754765 ttggttctttacaaccccaggagcggtaccttgaaggctattaactttaaa 3754815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 4158330 - 4157769
Alignment:
Q  1 ttcttgactaccaatttcttgataaggatgatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcagga 100  Q
    ||||||| |||| | |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  4158330 ttcttgaatacctagttcttgatgaggatgatagtttttttaacaaaactcaagtaaaggttcatactttgggtactaatatttggagaaccattcagga 4158231  T
Q  101 gtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcgtc---ggaatgtcca 197  Q
     |||| |||||| ||||||  ||||||  |   ||||||||||||||||||||| || |||||||||||||||||  ||||   ||    ||||| ||||    
T  4158230 ctatcattttggcggtcttattgttcccat---gaagggggaatttgtgagtggtacgattaattggttgttctctaaagagcagttctgggaatatcca 4158134  T
Q  198 cgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtg 297  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  4158133 tgctttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacttgtcggctttgggtg 4158034  T
Q  298 ttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 397  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  4158033 ttttgagggattgcttgtgcgtgaccacttctggttatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatctc 4157934  T
Q  398 ttacatgagagatccttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaa---gtatgattttgacttgaat 494  Q
    ||||| |||| |||||||||||  |||||    ||||| ||||||||||||||||||||||||||||||||||||| |   |||||||| ||||||||||    
T  4157933 ttacaagagacatccttctaaatttaaggcttttgccaaggcaatatatgtttttgaggatgatcaagtgttgctggagttgtatgattctgacttgaat 4157834  T
Q  495 ttgattctttacaatcccaggacgggtactttcaaggctactaattttaaacgaattcctgaagt 559  Q
    ||| | |||||||| |||||||  || ||||| ||||||||||||||||||| ||||||||||||    
T  4157833 ttggtcctttacaaccccaggagcggcactttgaaggctactaattttaaactaattcctgaagt 4157769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 191 - 402
Target Start/End: Original strand, 3745866 - 3746074
Alignment:
Q  191 atgtccacgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggtt 290  Q
    ||||||| ||||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||| | | |||||| | |||||  |||||||||||  |    
T  3745866 atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggagggatagatgtgtgtgacttgtcgtct 3745965  T
Q  291 ttgggtgttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 390  Q
    ||||||||||| |||||||||||||||||   |||||||||  ||||| ||||| ||||||||||||||| |||  |||||||||||||||||||||| |    
T  3745966 ttgggtgttttaagggattgcttgtgcgt---gacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttga 3746062  T
Q  391 ctattccttaca 402  Q
    ||||||||||||    
T  3746063 ctattccttaca 3746074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 201 - 401
Target Start/End: Complemental strand, 2678582 - 2678385
Alignment:
Q  201 tttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttt 300  Q
    ||||||||||| |||||||||||||  ||||||||||||||| | |||||||||| ||  |||||||   |||| ||| |  || |    ||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaagctatcacctcctagttatggaggggcaaatgtgggtaaaatgcctaccttgggtgttt 2678483  T
Q  301 tgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctta 400  Q
    ||| ||||||||||||| ||||   || |||  ||||||||||| |||||||  |||||||||| |||||||| ||||||||||||||||||||||||||    
T  2678482 tgaaggattgcttgtgcttgac---ttgtggtgatgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattcctta 2678386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 203 - 400
Target Start/End: Complemental strand, 2686496 - 2686299
Alignment:
Q  203 tattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttg 302  Q
    ||||||||| |||||||||||||  ||||||||||||||||| || ||||||| ||  |||||||| |||||  || || ||      ||||||||||||    
T  2686496 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 2686397  T
Q  303 agggattgcttgtgcgtgacgacttctggctatgatgtttggcttat---gaaggaatatggaaataaagagtcttggactaaattgttcactattcctt 399  Q
    |||||||| |||||| |||     | |||  ||||||||||| ||||   ||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  2686396 agggattgtttgtgcttgatc---tgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttcactattcctt 2686300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 290 - 392
Target Start/End: Complemental strand, 803312 - 803213
Alignment:
Q  290 tttgggtgttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 389  Q
    ||||||| | |||||||||||||||||| |||    ||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  803312 tttgggtatgttgagggattgcttgtgcatgat---ttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttc 803216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 336 - 407
Target Start/End: Original strand, 2456249 - 2456320
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgaga 407  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||| |  ||||||||||||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgtaccatattccttacatgaga 2456320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 334 - 392
Target Start/End: Complemental strand, 2696785 - 2696727
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 392  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  2696785 atgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 989394 - 989474
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcctt 414  Q
    ||||||||||| | ||||| || || |||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  989394 atgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttcttacatgcaagatcctt 989474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 9587233 - 9587161
Alignment:
Q  339 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 411  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||| || ||||||||||||| ||||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgtacaatattccttacatgggagatc 9587161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 968669 - 968735
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctta 400  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||    
T  968669 atgatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcactatttctta 968735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 1931207 - 1931137
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||||||| |||||| |||| ||||||||||||| || ||||||||||||||||||||| ||||||||    
T  1931207 atgatgtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactatttcttacatg 1931137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 2644413 - 2644351
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcct 398  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2644351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 398
Target Start/End: Complemental strand, 2659203 - 2659141
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcct 398  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2659141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 1007459 - 1007520
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 395  Q
    ||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  1007459 atgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 1022487 - 1022548
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 395  Q
    ||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  1022487 atgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 2442039 - 2442095
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 392  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 2442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 2459277 - 2459352
Alignment:
Q  338 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 413  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||  || ||||||||  |||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtttaccgtttcttacatgccagatcct 2459352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 2631358 - 2631425
Alignment:
Q  337 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||| || | ||||| |||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcctgacatg 2631425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 7334290 - 7334215
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 411  Q
    ||||||||| | |||||||| || |||||||||||||||||||||||||||| |||||||||| || ||| |||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcctaacctgaaagatc 7334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 7432107 - 7432040
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttac 401  Q
    |||||||||||  |||||||||||||||||||||||| || ||||||||||||||||| ||| |||||    
T  7432107 atgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcaccatttcttac 7432040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 1940632 - 1940562
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||||||| ||||||||||| |||||||| |||| || ||||||||||||||||||||| ||| ||||    
T  1940632 atgatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttcttgcatg 1940562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 413
Target Start/End: Original strand, 956381 - 956458
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 413  Q
    ||||||||| ||||||||||||||||||| ||||||||||||  ||||||||||| |||| || |||||  |||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgttcattatttctcacatgcaagatcct 956458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 1891117 - 1891064
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  1891117 atgatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 23197014 - 23197079
Alignment:
Q  338 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacat 403  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||||||   ||||||||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattccttacat 23197079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 2476634 - 2476702
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||||| |||||||  | ||||||||||||||||||||||||||||||| |||| ||||| |||||    
T  2476634 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacactgttcctaacatg 2476702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 7942485 - 7942553
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||||| |||||||||| ||||| |||||||||||||||| |||||||| || | |||||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatg 7942553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 771550 - 771499
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 783850 - 783775
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 411  Q
    ||||||||| ||||||||||||||||||||| | || | |||||||||||||  ||| ||||||||||| ||||||    
T  783850 gatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatgggagatc 783775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 7324482 - 7324431
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattgt 7324431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 37753396 - 37753345
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  37753396 gatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 43991960 - 43992011
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| |||||||    
T  43991960 gatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgt 43992011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 1937034 - 1936972
Alignment:
Q  333 tatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 395  Q
    |||||||||||| ||||||||||||||  ||||||||| || ||| |||||||||||||||||    
T  1937034 tatgatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcactatt 1936972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 2502148 - 2502210
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcct 398  Q
    ||||||||| |||||||||| ||||||||||| |||| |||||||||| ||| ||||||||||    
T  2502148 gatgtttggattatgaaggagtatggaaataaggagttttggactaaactgtacactattcct 2502210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 9608396 - 9608346
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  9608396 tgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 44001605 - 44001655
Alignment:
Q  346 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattc 396  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||||||||    
T  44001605 ttatgaaggaatatggaattaaagagtcttggactaaactgtacactattc 44001655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 997578 - 997623
Alignment:
Q  338 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaa 383  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 1013968 - 1014013
Alignment:
Q  338 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaa 383  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 14888660 - 14888588
Alignment:
Q  339 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 411  Q
    |||||| ||||||| ||||||| |||||||||| ||| ||||||||||| || |||| |||||||| ||||||    
T  14888660 gtttggattatgaatgaatatgaaaataaagagccttagactaaattgtacaatattacttacatgggagatc 14888588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 754660 - 754609
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||| |||||||||| |||||| || |||||||||||||||||||||    
T  754660 gatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 1437996 - 1438046
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  1437996 gatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattgt 1438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 2492083 - 2492133
Alignment:
Q  337 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 2492133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 12133097 - 12133151
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 390  Q
    ||||||||| |||||| ||| |||||||||| |||||| ||||||||||||||||    
T  12133097 gatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttca 12133151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 23231031 - 23230981
Alignment:
Q  338 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    ||||||||| ||||| |||||||||||| |||||||||||| |||||||||    
T  23231031 tgtttggctaatgaaagaatatggaaatgaagagtcttggattaaattgtt 23230981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 23231307 - 23231261
Alignment:
Q  44 caaaactcaagtaatggttcatactttgggtactaatatatggagaa 90  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||    
T  23231307 caaaactcaaggaatggttcatactttgggtactaattcatggagaa 23231261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 9562036 - 9561987
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||||||| ||||||| || ||||||||| |||||||||||||||||||    
T  9562036 gatgtttggattatgaatgagtatggaaatcaagagtcttggactaaatt 9561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 23235199 - 23235146
Alignment:
Q  44 caaaactcaagtaatggttcatactttgggtactaatatatggagaaccattca 97  Q
    |||||||||||  ||||||||||||||||||||||||  ||||||||| |||||    
T  23235199 caaaactcaaggcatggttcatactttgggtactaattcatggagaacaattca 23235146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 768379 - 768327
Alignment:
Q  337 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 389  Q
    |||||||| ||||||| || || |||||| |||||||||||||||||||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttc 768327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 2678723 - 2678671
Alignment:
Q  60 gttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg 112  Q
    ||||||||||||||| ||||||| ||||||| |||||| |||| |||||||||    
T  2678723 gttcatactttgggttctaatatttggagaaacattcaagagtttccttttgg 2678671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 404
Target Start/End: Original strand, 13479590 - 13479646
Alignment:
Q  348 atgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||||||| || |||||    
T  13479590 atgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatg 13479646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 387
Target Start/End: Complemental strand, 746422 - 746383
Alignment:
Q  348 atgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgt 746383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 7430587 - 7430536
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||| |||||||| | |||||||||||| |||||| |||||||||||    
T  7430587 gatgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgt 7430536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 9565880 - 9565829
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||| |||||||||| || ||| || |||||||||||||||||||||    
T  9565880 gatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgt 9565829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 401
Target Start/End: Complemental strand, 37757777 - 37757722
Alignment:
Q  346 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttac 401  Q
    ||||||||||||||||||| |||||||||||||| || |||| || | ||||||||    
T  37757777 ttatgaaggaatatggaaacaaagagtcttggacgaagttgtacagtgttccttac 37757722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 3745803 - 3745841
Alignment:
Q  137 gggggaatttgtgagtggcacaattaattggttgttctc 175  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  3745803 ggggaaatttgtgagtggcactattaattggttgttctc 3745841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 7398228 - 7398178
Alignment:
Q  338 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    ||||||| | |||||||| ||||||||| |||||||||||| |||||||||    
T  7398228 tgtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgtt 7398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 7443027 - 7442977
Alignment:
Q  337 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    |||||||| | |||||||| ||||||||| |||||||||||||||| ||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgt 7442977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 23234915 - 23234865
Alignment:
Q  338 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    ||||||||| ||||| |||||||||||   |||||||||||||||||||||    
T  23234915 tgtttggctgatgaaagaatatggaaacgtagagtcttggactaaattgtt 23234865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 2686653 - 2686584
Alignment:
Q  43 acaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg 112  Q
    ||||| || |||||| |||||||||||||||| ||||||| |||| || ||| || |||| |||||||||    
T  2686653 acaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatccatgagtttccttttgg 2686584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 7427646 - 7427605
Alignment:
Q  346 ttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    |||||| ||||||||||||||||||||| ||| |||||||||    
T  7427646 ttatgatggaatatggaaataaagagtcgtgggctaaattgt 7427605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 472
Target Start/End: Complemental strand, 2686259 - 2686227
Alignment:
Q  440 aatatatgtttttgaggatgatcaagtgttgct 472  Q
    |||||||||||||||||||||||||||| ||||    
T  2686259 aatatatgtttttgaggatgatcaagtgctgct 2686227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 9594674 - 9594622
Alignment:
Q  337 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 389  Q
    |||||||| |||||||  | || |||||| |||||||||||||||||||||||    
T  9594674 atgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttc 9594622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 12218037 - 12218077
Alignment:
Q  346 ttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  12218037 ttatgatggaatatggaaataaagagtcgtgggctaaattg 12218077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 78 - 564
Target Start/End: Original strand, 11081555 - 11082047
Alignment:
Q  78 aatatatggagaaccattcaggagtatccttttggaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaatt-ggttgttctcc 176  Q
    ||||| ||||||||||||||||| |||| |||||| ||||||  |||||| |||| ||| |||||||||||||||||| ||||||||| ||||||||||     
T  11081555 aatatttggagaaccattcaggattatctttttggcggtcttattgttcccgttatgaaaggggaatttgtgagtggcgcaattaatttggttgttctct 11081654  T
Q  177 gaagaatcgtcggaatgtccacgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttg 276  Q
     | |  |  | |||||||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||      
T  11081655 aatgg-tgttgggaatgtccacgctttattgtttgtttcgatttggcaaaggagtcttatcaaaagatttcacctcctaatttggaaggggtggatgtgc 11081753  T
Q  277 gtgacttgtcggttttgggtgttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttg 376  Q
    || ||||||||| ||||||||||||||||||||||||||| ||||||||| || |  ||||||||||| |||||||||| ||||||||||||||||||||    
T  11081754 gtaacttgtcggctttgggtgttttgagggattgcttgtgtgtgacgactactagtgatgatgtttgggttatgaaggagtatggaaataaagagtcttg 11081853  T
Q  377 gactaaattgttcactattccttacatgagagatccttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaag 476  Q
    |||||||||||| ||||||||||||||||||||||||||||||| | | |||  | ||| |||| ||||| | ||||||||||||||||||||| |||||    
T  11081854 gactaaattgtttactattccttacatgagagatccttctaaacgtgatgtctttcccaaggcagtatatatatttgaggatgatcaagtgttgttgaag 11081953  T
Q  477 t------atgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctactaattttaaacgaattcctgaagtctgtg 564  Q
    |      |||||||||||||||||||||||||||||||||| ||||   ||||||| ||||||| ||||||||||   ||||| ||||||||||    
T  11081954 tttatgaatgattttgacttgaatttgattctttacaatcctaggagccgtactttgaaggctaataattttaaagatattccagaagtctgtg 11082047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 23766915 - 23766854
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 395  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23766915 atgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 23816763 - 23816702
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 395  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23816763 atgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 23769699 - 23769629
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||    
T  23769699 atgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatg 23769629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 23819547 - 23819477
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||    
T  23819547 atgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatg 23819477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 23732165 - 23732230
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcctt 399  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||| |||| |||||||||||||||    
T  23732165 atgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcctt 23732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 3181715 - 3181767
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  3181715 atgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 23861079 - 23861009
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||||||| ||||    
T  23861079 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 23861009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 23764313 - 23764243
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||| ||||||||||||||||| ||||    
T  23764313 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactacattgttcactattcctttcatg 23764243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 23814146 - 23814076
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||||||| | |||||||||||||| |  | || ||||||||||||||||||||||||||||| ||||    
T  23814146 atgatgtttggataatgaaggaatatgggatgacagcgtcttggactaaattgttcactattcctttcatg 23814076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 20301443 - 20301492
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  20301443 gatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 20305856 - 20305905
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  20305856 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 20310260 - 20310309
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  20310260 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 1427746 - 1427679
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttac 401  Q
    ||||||||||| ||||||| || |||||||||| ||||||||||| |||| ||||||| ||| |||||    
T  1427746 atgatgtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttcacaatttcttac 1427679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 6401817 - 6401767
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||||||    
T  6401817 gatgtttggcttatgaaggaatttgaaaatagagagtcatggactaaattg 6401767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 41973523 - 41973469
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    ||||||||||| ||||||||||||||| |||||||| ||| ||||||||| ||||    
T  41973523 atgatgtttgggttatgaaggaatatgaaaataaagtgtcatggactaaactgtt 41973469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 477
Target Start/End: Complemental strand, 1427643 - 1427603
Alignment:
Q  437 ggcaatatatgtttttgaggatgatcaagtgttgctgaagt 477  Q
    |||||||||| | |||||||||||||||||| |||||||||    
T  1427643 ggcaatatatatctttgaggatgatcaagtgctgctgaagt 1427603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 6402109 - 6402077
Alignment:
Q  44 caaaactcaagtaatggttcatactttgggtac 76  Q
    |||||||||||| ||||||||||||||||||||    
T  6402109 caaaactcaagttatggttcatactttgggtac 6402077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 89142 - 89211
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||| || | |||||||||||    
T  89142 tgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatg 89211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 404
Target Start/End: Complemental strand, 51381507 - 51381438
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 23896189 - 23896147
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttgg 377  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23896189 tgatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 24513054 - 24513106
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||| |||||||    
T  24513054 atgatgtttggcttatgaaagaatatggaagtaaagagtcatggattaaattg 24513106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 378
Target Start/End: Complemental strand, 24246549 - 24246506
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttgga 378  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  24246549 tgatgtttggcttatgaaagaatacggaaataaagagtcttgga 24246506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 25478864 - 25478915
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    |||||||||||||||||||||||| || |||||||| ||||||| |||||||    
T  25478864 tgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaattg 25478915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 24242909 - 24242859
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    |||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  24242909 tgatgtttggcttatgaagatatacggaaataaagagtcttggattaaatt 24242859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 24634858 - 24634817
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtctt 375  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  24634858 atgatgtttggcttatgaaggaatacggaattaaagagtctt 24634817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 51858605 - 51858658
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    |||||||||| | ||||||||||||||||||  ||| |||||||||||||||||    
T  51858605 tgatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgtt 51858658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 51782796 - 51782848
Alignment:
Q  333 tatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    |||||||||||| |||||||||||||||||||| || | ||||||| ||||||    
T  51782796 tatgatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 24626823 - 24626773
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    |||||||||||||||||||||||  ||| |||||||||||||  |||||||    
T  24626823 gatgtttggcttatgaaggaatacagaattaaagagtcttgggttaaattg 24626773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 51407600 - 51407558
Alignment:
Q  346 ttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    |||||||||||||||| ||| || |||||||||||||||||||    
T  51407600 ttatgaaggaatatgggaatgaacagtcttggactaaattgtt 51407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 25609416 - 25609375
Alignment:
Q  348 atgaaggaatatggaaataaagagtcttggactaaattgttc 389  Q
    ||||||||||||| || | |||||||||||||||||||||||    
T  25609416 atgaaggaatatgaaattcaagagtcttggactaaattgttc 25609375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 25611020 - 25610967
Alignment:
Q  333 tatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    |||||||||||||| |||| |||||| ||||||||||| ||||||  |||||||    
T  25611020 tatgatgtttggctaatgacggaatacggaaataaagaatcttgggttaaattg 25610967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 51756802 - 51756749
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    |||||||||| | ||||||||||||||||||  | | |||||||||||||||||    
T  51756802 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 51756749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 51854946 - 51854999
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    |||||||||| | ||||| ||||||||||||  ||| |||||||||||||||||    
T  51854946 tgatgtttggatcatgaaagaatatggaaatgtagaatcttggactaaattgtt 51854999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 22672175 - 22672110
Alignment:
Q  339 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    |||||| | |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttacatg 22672110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 20019825 - 20019746
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 413  Q
    ||||||||||| | |||||||||||||||| | |||||||||||||||||||||||||| || || |||||  |||||||    
T  20019825 atgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagatcct 20019746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 397
Target Start/End: Original strand, 55419788 - 55419843
Alignment:
Q  342 tggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 397  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||| ||||||||    
T  55419788 tggcttatgaaggtttatggaaataaagattcttggactaaattgtttactattcc 55419843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 11032910 - 11032960
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  11032910 gatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattg 11032960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 20016224 - 20016180
Alignment:
Q  348 atgaaggaatatggaaataaagagtcttggactaaattgttcact 392  Q
    |||||||||||||||| | ||||||||||||||||||||||||||    
T  20016224 atgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 20020096 - 20020041
Alignment:
Q  57 atggttcatactttgggtactaatatatggagaaccattcaggagtatccttttgg 112  Q
    ||||||||||| |||||||||||| | |||| || ||||||||||| |||||||||    
T  20020096 atggttcataccttgggtactaatttttggaaaagcattcaggagtgtccttttgg 20020041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 7160805 - 7160730
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 411  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||||  | ||||| |||||| |||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtcttcctcacatgaaagatc 7160730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 339 - 410
Target Start/End: Complemental strand, 7168738 - 7168667
Alignment:
Q  339 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagat 410  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||    ||||||||||| |||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatgggagat 7168667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 7156243 - 7156169
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagat 410  Q
    |||||||||||||||||||| ||||||||| |||| |||||| |||||||||||  | ||||||||||| |||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatgggagat 7156169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 7174424 - 7174356
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||| |||||||  | |||||||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttccttacatg 7174356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 6538843 - 6538888
Alignment:
Q  345 cttatgaaggaatatggaaataaagagtcttggactaaattgttca 390  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||    
T  6538843 cttatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 33038159 - 33038228
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||| ||||| |  | |||||||||||    
T  33038159 tgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgtaccgtgttccttacatg 33038228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 11237693 - 11237760
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacat 403  Q
    ||||||||||||||| |||| |||||||||| |||  |||||||||||||||||  | ||||||||||    
T  11237693 gatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttccttacat 11237760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 33020314 - 33020381
Alignment:
Q  337 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    |||| ||| ||||||||||||||||||||||| |||||||||||| ||||| |  | |||||||||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgtaccgtgttccttacatg 33020381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 33026657 - 33026708
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||| |||||    
T  33026657 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 33026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 409
Target Start/End: Complemental strand, 34560958 - 34560895
Alignment:
Q  346 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagaga 409  Q
    ||||||| ||||||||||||||| | ||||||||||||||||  | | ||||| ||||||||||    
T  34560958 ttatgaaagaatatggaaataaaaaatcttggactaaattgtatagtgttcctaacatgagaga 34560895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 20538030 - 20538074
Alignment:
Q  348 atgaaggaatatggaaataaagagtcttggactaaattgttcact 392  Q
    ||||| |||||||||| | |||| |||||||||||||||||||||    
T  20538030 atgaatgaatatggaatttaagaatcttggactaaattgttcact 20538074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 335 - 386
Target Start/End: Complemental strand, 32381 - 32330
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  32381 tgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 386
Target Start/End: Complemental strand, 40433 - 40382
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  40433 tgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaattg 40382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 335 - 386
Target Start/End: Complemental strand, 1421221 - 1421170
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 386  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  1421221 tgatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 1078211 - 1078134
Alignment:
Q  336 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatcct 413  Q
    ||||||||| |||||||||| |||||||||| |||||| |||||||||||||||| | || |||||| | ||||||||    
T  1078211 gatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcct 1078134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 39298976 - 39299045
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    |||||||||| || ||||||||| ||||||||||||||| ||||||||||| | || | |||||||||||    
T  39298976 tgatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatg 39299045  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 317
Target Start/End: Complemental strand, 1078369 - 1078245
Alignment:
Q  193 gtccacgctttattgtttcatttgatttggcaatggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggtttt 292  Q
    |||| |||||||||||||| |||||||||| ||  || |||||||||||| |||  |||||| |||  |||||||| |||||  || |||| |  |  ||    
T  1078369 gtcctcgctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagatgtgtgtcacttcttagcctt 1078270  T
Q  293 gggtgttttgagggattgcttgtgc 317  Q
    |||||| ||||||||||||||||||    
T  1078269 gggtgtgttgagggattgcttgtgc 1078245  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  340 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 389  Q
    ||||| |||||||||| |||||||||||| | ||||||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 27755733 - 27755774
Alignment:
Q  346 ttatgaaggaatatggaaataaagagtcttggactaaattgt 387  Q
    |||||||||||||| ||||||||||||| | |||||||||||    
T  27755733 ttatgaaggaatatagaaataaagagtcatagactaaattgt 27755774  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 19727879 - 19727948
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacat 403  Q
    ||||||||||| ||||||  ||||||| |||||||||||| ||||||||| ||||||||||| |||||||    
T  19727879 atgatgtttgggttatgacagaatatgcaaataaagagtcatggactaaactgttcactatttcttacat 19727948  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 24417536 - 24417477
Alignment:
Q  337 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattc 396  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||||||||| || |||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgtacagtattc 24417477  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 19119065 - 19119131
Alignment:
Q  338 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||||||   | |||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatg 19119131  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 19126359 - 19126425
Alignment:
Q  338 tgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 404  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||||||   | |||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatg 19126425  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 176338 - 176395
Alignment:
Q  340 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 397  Q
    |||||| |||||| || |||||||||||||| ||||||||||||||||||||| ||||    
T  176338 tttggcgtatgaatgattatggaaataaagattcttggactaaattgttcactcttcc 176395  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  340 tttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 370833 - 370777
Alignment:
Q  339 gtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatt 395  Q
    |||||| |||||||| | |||||||||||||| ||||||||||||||||||| ||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatt 370777  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 1442149 - 1442098
Alignment:
Q  346 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 397  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttcactgttcc 1442098  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 9703933 - 9703888
Alignment:
Q  340 tttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 9825562 - 9825517
Alignment:
Q  340 tttggcttatgaaggaatatggaaataaagagtcttggactaaatt 385  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||    
T  9825562 tttggcttatgaaggaatatggaaatagaaactcttggactaaatt 9825517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 17368365 - 17368418
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    |||||||||||| ||||| || ||||||||| ||| ||||||||||||||||||    
T  17368365 tgatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtt 17368418  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 7564798 - 7564748
Alignment:
Q  340 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 390  Q
    ||||| |||||||||| |||||||| || || |||||||||||||||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttca 7564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 4183053 - 4183000
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    |||||||||| | ||||||||||||||||||  | | |||||||||||||||||    
T  4183053 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4183000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 4743897 - 4743844
Alignment:
Q  335 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    |||||||||| | ||||||||||||||||||  | | |||||||||||||||||    
T  4743897 tgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4743844  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 1459588 - 1459540
Alignment:
Q  340 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  1459588 tttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 1459540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 1470970 - 1470922
Alignment:
Q  340 tttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    ||||| ||||||| || |||||||||||||| |||||| ||||||||||    
T  1470970 tttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

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Target: scaffold0200 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 831 - 777
Alignment:
Q  334 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 388  Q
    ||||||||||| ||||||||||||||| |||||||| ||| ||||||||| ||||    
T  831 atgatgtttgggttatgaaggaatatgaaaataaagtgtcatggactaaactgtt 777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 2144 - 2191
Alignment:
Q  337 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaat 384  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||    
T  2144 atgtttgggctatgaaggaatatggaaatgtagagtcttggactaaat 2191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 4639 - 4686
Alignment:
Q  337 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaat 384  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||    
T  4639 atgtttgggctatgaaggaatatggaaatgtagagtcttggactaaat 4686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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