View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_13 (Length: 529)
Name: NF20764_high_13
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 56 - 239
Target Start/End: Complemental strand, 30288832 - 30288649
Alignment:
| Q |
56 |
catgccaaagtggatcaagagaaaatgatccctcatgagaatactaaatgtatggtaaataaattcatttatgttcagaatgatggtttgacttaagaaa |
155 |
Q |
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| T |
30288832 |
catgctaaagtggatcaagagaaaatgatcccttgtaagaatactaaatgtatggtaaataaattcatttatgttcagaaggatggtttgactacagaaa |
30288733 |
T |
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| Q |
156 |
atgcttctatagtgtgttgataatgattctcattcaagatttgtggattctactaaatgaaaagaagtgtttatggggaagttg |
239 |
Q |
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| T |
30288732 |
atgcatctaaaatgtgttgatactgattctcattcaagatttgtggattctactaaatgaaaagaagtgtttatggggaagttg |
30288649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 30293695 - 30293555
Alignment:
| Q |
50 |
gtacgtcatgccaaagtggatcaagagaaaatgatccctcatgagaatactaaatgtatggtaaataaattcatttatgttcagaatgatggtttgactt |
149 |
Q |
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| T |
30293695 |
gtacgtcatgctaaagtggatcaagagaaaatgatcccttatgagaatactaaatgtatggtaaataaattcatttatgttcagaatgatggtttgacta |
30293596 |
T |
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| Q |
150 |
aagaaaatgcttctatagtgtgttgataatgattctcattc |
190 |
Q |
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| T |
30293595 |
aagaaaatgcttctatagtgtgttgataatgattctcattc |
30293555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 392 - 509
Target Start/End: Complemental strand, 30293474 - 30293356
Alignment:
| Q |
392 |
aaatgatattcttgaaaggatttgggatatgcatattataggttcttggttataggtaaacaatgttaa-aatcacaatagctcttctgatttgaaaaca |
490 |
Q |
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| T |
30293474 |
aaatgatattcttgaaaggatttcagacatgtatattataggttcttggttataggtaaacaatgttaagaatcacaatacctcttctaatttggatgca |
30293375 |
T |
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| Q |
491 |
aatttacattcaaggacta |
509 |
Q |
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| T |
30293374 |
gatttacattcaaggacta |
30293356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 30293540 - 30293512
Alignment:
| Q |
177 |
aatgattctcattcaagatttgtggattc |
205 |
Q |
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| T |
30293540 |
aatgattctcattcaagatttgtggattc |
30293512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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