View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_14 (Length: 516)
Name: NF20764_high_14
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 13578814 - 13579090
Alignment:
| Q |
11 |
gatgaacaaaaacgaagccccgtgatccgaaagaaaacagcgacgaatagccaaaacatggcttcacttattagtccgagattcaaatctgctgctgcta |
110 |
Q |
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| T |
13578814 |
gatgaacaaaaacgaagccccgtgatccgaaagaaaacagcgacgaatagccaaaacatggcttcacttattagtccgagattcaaatctgctgctgcta |
13578913 |
T |
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| Q |
111 |
tggctggttgggatgaagaagcgctgttacttgcaaccctaattgttgaagatacccctgatcgagatcgagattctaaacagaaaagacgttttgtttt |
210 |
Q |
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| T |
13578914 |
tggctggttgggatgaagaagcgctgttacttgcaaccctaattgttgaagatacccctgatcgagatcgaaattctaaacagaagagacgttttgtttt |
13579013 |
T |
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| Q |
211 |
gaattcgaaatctccgctctccaattcatcaaggtaatcatgatttatcacttttttgttcatcgtttgaaaaaccc |
287 |
Q |
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| T |
13579014 |
gaattcgaaatctccgctctccaattcatcaaggtaatcatgatttaacacttttttgttcatcgtttgaaaaaccc |
13579090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 336 - 496
Target Start/End: Original strand, 13579134 - 13579297
Alignment:
| Q |
336 |
tttgaagaatttggttgatttcattagttttgttattgggttgatttggatctgatttgtcttt--gtgtttaagattggttttttattaagaatattgg |
433 |
Q |
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| T |
13579134 |
tttgaagaatttggttgatttcattagttttgttattgggttgatttgcatctaatttgtctttttgtgtttaagattggttttttattaagaatattag |
13579233 |
T |
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| Q |
434 |
ttaattattagtttgatttatgggttgatttgggttgatttgaattgtta-tttgtgtttagga |
496 |
Q |
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| T |
13579234 |
ttaattattagtttgattaatgggtcgatttgggttgatttgaattgttattttgtgtttagga |
13579297 |
T |
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