View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_high_15 (Length: 478)

Name: NF20764_high_15
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_high_15
NF20764_high_15
[»] chr8 (15 HSPs)
chr8 (4-430)||(30429111-30429534)
chr8 (10-185)||(30431066-30431241)
chr8 (11-185)||(30447222-30447395)
chr8 (19-182)||(30419204-30419366)
chr8 (11-126)||(30430122-30430235)
chr8 (16-155)||(30431622-30431750)
chr8 (23-70)||(30440192-30440238)
chr8 (253-324)||(39138996-39139067)
chr8 (262-324)||(16340318-16340380)
chr8 (339-377)||(26682215-26682253)
chr8 (253-318)||(27134418-27134483)
chr8 (22-143)||(30414679-30414798)
chr8 (87-152)||(30439636-30439701)
chr8 (254-322)||(8544598-8544666)
chr8 (339-375)||(10129250-10129286)
[»] chr4 (7 HSPs)
chr4 (250-315)||(17058984-17059049)
chr4 (250-321)||(32006495-32006566)
chr4 (277-328)||(24378373-24378424)
chr4 (257-324)||(39606569-39606635)
chr4 (339-374)||(50352449-50352484)
chr4 (276-325)||(21052578-21052627)
chr4 (257-322)||(37725723-37725788)
[»] chr7 (4 HSPs)
chr7 (257-323)||(47677579-47677645)
chr7 (257-322)||(23198751-23198816)
chr7 (339-376)||(46290157-46290194)
chr7 (339-375)||(28061318-28061354)
[»] chr5 (9 HSPs)
chr5 (253-319)||(27903110-27903176)
chr5 (253-323)||(2839791-2839861)
chr5 (277-322)||(3630653-3630698)
chr5 (276-321)||(16193102-16193147)
chr5 (266-311)||(24158977-24159022)
chr5 (339-376)||(36597726-36597763)
chr5 (339-375)||(4047559-4047595)
chr5 (339-375)||(30839928-30839964)
chr5 (339-383)||(31705076-31705120)
[»] scaffold0568 (1 HSPs)
scaffold0568 (250-315)||(917-982)
[»] chr1 (8 HSPs)
chr1 (262-323)||(52043266-52043327)
chr1 (327-363)||(6307499-6307535)
chr1 (257-325)||(13590101-13590169)
chr1 (257-325)||(20481091-20481159)
chr1 (257-321)||(24695554-24695618)
chr1 (339-375)||(42589168-42589204)
chr1 (339-375)||(44013072-44013108)
chr1 (253-321)||(51046137-51046205)
[»] scaffold0111 (1 HSPs)
scaffold0111 (339-377)||(37107-37145)
[»] chr6 (3 HSPs)
chr6 (257-323)||(12256470-12256535)
chr6 (262-323)||(9444950-9445011)
chr6 (339-375)||(8467800-8467836)
[»] chr3 (10 HSPs)
chr3 (253-323)||(4332665-4332735)
chr3 (265-322)||(48531272-48531329)
chr3 (276-324)||(9598431-9598479)
chr3 (339-375)||(10307913-10307949)
chr3 (339-375)||(13495289-13495325)
chr3 (327-363)||(13495290-13495326)
chr3 (339-375)||(23523093-23523129)
chr3 (339-375)||(29932347-29932383)
chr3 (339-375)||(29981501-29981537)
chr3 (339-375)||(50204550-50204586)
[»] chr2 (7 HSPs)
chr2 (339-377)||(8065270-8065308)
chr2 (339-377)||(43941847-43941885)
chr2 (339-376)||(8847934-8847971)
chr2 (341-378)||(27665036-27665073)
chr2 (339-375)||(3951246-3951282)
chr2 (339-375)||(3951397-3951433)
chr2 (339-375)||(29157824-29157860)
[»] scaffold0012 (1 HSPs)
scaffold0012 (276-325)||(118810-118859)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 430
Target Start/End: Complemental strand, 30429534 - 30429111
Alignment:
Q  4 ggaggagcacagatgtttggttctttaaccatttagttaaaagatttgattgtggcttatgcatataaaaattcaaatgttgggatggatcaatatctta 103  Q
    |||| |||||| |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30429534 ggagtagcacaaatgtttggttctttaaccatttagctaaa-gatttgattgtggtttatgcatataaaaattcaaatgttgggatggatcaatatctta 30429436  T
Q  104 attaaatctcaatcatcttagattattagtctttgtaaaggtcgacttaagatcaaaattgataaaattattatttttaccannnnnnnncttcaaaata 203  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||         |||||||||    
T  30429435 attagatctcaatcatcttagattattagtctttgtaaaggtccatttaagatccaaactgataaaattattatttttaccatttttttt-ttcaaaata 30429337  T
Q  204 tcattttctcacttatttaatgaagggtttgtcnnnnnnnggtgtcggccggagtttaaaccccgaacttttcatattttatatattattcaaaccaact 303  Q
    |||||||||||||||||||||||||||||||||       || | ||||| | ||||||||||||||| || ||||||||||||||| ||| ||||||||    
T  30429336 tcattttctcacttatttaatgaagggtttgtctttttttggcggcggccagggtttaaaccccgaaccttgcatattttatatattgttc-aaccaact 30429238  T
Q  304 gaactaaactcacgaggacaatgaagggtttgtcgaacatgtgcaaatttgcatatgttagaaaaaccctttaatgaataatattgttctatacattttg 403  Q
    ||  ||| || ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  30429237 gagttaagcttacgaggacaatgaagggtttgtctaacatgtgtaaatttgcacatgttagaaaaactatttaatgaataatattgttctatacattttg 30429138  T
Q  404 caaaagaagacggcactattaagaagg 430  Q
    |||||||||||||||||||||||||||    
T  30429137 caaaagaagacggcactattaagaagg 30429111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 30431241 - 30431066
Alignment:
Q  10 gcacagatgtttggttctttaaccatttagttaaaagatttgattgtggcttatgcatataaaaattcaaatgttgggatggatcaatatcttaattaaa 109  Q
    ||||| ||||||||||||||||||||||||||||| ||||| |||| || |||||| |||| |||| |||||||  |||||||||||| | |||| || |    
T  30431241 gcacaaatgtttggttctttaaccatttagttaaa-gattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatata 30431143  T
Q  110 tctcaatcatcttagattattagtcttt-gtaaaggtcgacttaagatcaaaattgataaaattattatttttacca 185  Q
    | |||||||||| |||| |||| ||||| ||||| ||| ||||||| ||||| ||||||||| ||||||||||||||    
T  30431142 tgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttacca 30431066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 30447395 - 30447222
Alignment:
Q  11 cacagatgtttggttctttaaccatttagttaaaagatttgattgtggcttatgcatataaaaattcaaatgttgggatggatcaatatcttaattaaat 110  Q
    |||| |||||||| |||| |||||||| |||||| ||||||||||||| ||||||||||| ||||  |||| |||| ||| |||||| |||||| ||  |    
T  30447395 cacaaatgtttggctcttgaaccattttgttaaa-gatttgattgtggtttatgcatatagaaatataaattttgg-atgcatcaatctcttaaataggt 30447298  T
Q  111 ctcaatcatcttagattattagtctttgt-aaaggtcgacttaagatcaaaattgataaaattattatttttacca 185  Q
    ||||||||||| |||| |||||||| ||| |||||||||||||| | | ||  | |||||| ||||||||||||||    
T  30447297 ctcaatcatctcagatgattagtctatgtaaaaggtcgacttaaaacccaagctaataaaactattatttttacca 30447222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 30419366 - 30419204
Alignment:
Q  19 tttggttctttaaccatttagttaaaagatttgattgtggcttatgcatataaaaattcaaatgttgggatggatcaatatcttaattaaatctcaatca 118  Q
    ||||||||||||||||||||||||||  |||| |||| |  |||||| |||| |||  ||||||| ||||||||||||| | |||| || || |||||||    
T  30419366 tttggttctttaaccatttagttaaattattt-attgagttttatgcttatacaaacacaaatgtagggatggatcaatctattaaatatatgtcaatca 30419268  T
Q  119 tcttagattattagtctttgtaaaggtcgacttaagatcaaaattgataaaattattattttta 182  Q
    |||| ||| |||| |||||||||| | | ||||||   | || ||||||||| |||||||||||    
T  30419267 tcttggatgattaatctttgtaaatgccaacttaatccccaagttgataaaactattattttta 30419204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 30430235 - 30430122
Alignment:
Q  11 cacagatgtttggttctttaaccatttagttaaaagatttgattgtggcttatgcatataaaaattcaaatgttgggatggatcaatatcttaattaaat 110  Q
    |||| |||||||| |||||||| |||| |||||| ||||||||||| | ||||||||||| |||| ||||| |||||||| | ||||||||||| || ||    
T  30430235 cacaaatgtttgggtctttaacaattttgttaaa-gatttgattgttgtttatgcatatagaaatgcaaat-ttgggatgcaccaatatcttaaatagat 30430138  T
Q  111 ctcaatcatcttagat 126  Q
    ||||||||||| ||||    
T  30430137 ctcaatcatctcagat 30430122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 30431750 - 30431622
Alignment:
Q  16 atgtttggttctttaaccatttagttaaaagatttgattgtggcttatgcatataaaaattcaaatgttgggatggatcaatatcttaattaaatctcaa 115  Q
    ||||||| ||||||||||||||||||||| ||||| |||| || ||||| |||        |||| ||||||||||||  || ||||||  | |||||||    
T  30431750 atgtttgtttctttaaccatttagttaaa-gattttattgaggtttatgaata--------caaacgttgggatggat--atctcttaagaagatctcaa 30431662  T
Q  116 tcatcttagattattagtctttgtaaaggtcgacttaaga 155  Q
    |||||| | || ||||||||||||||||||||||||||||    
T  30431661 tcatctcacatgattagtctttgtaaaggtcgacttaaga 30431622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 30440238 - 30440192
Alignment:
Q  23 gttctttaaccatttagttaaaagatttgattgtggcttatgcatata 70  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  30440238 gttctttaaccatttagttaaa-gatttgattgtggtttatgcatata 30440192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 39138996 - 39139067
Alignment:
Q  253 cggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggacaa 324  Q
    |||||||| |||||||||| || ||||||||||  |||||| ||||||||||| |||| |||||| ||||||    
T  39138996 cggagtttgaaccccgaaccttacatattttatgcattattaaaaccaactgagctaagctcacgtggacaa 39139067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 16340380 - 16340318
Alignment:
Q  262 aaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggacaa 324  Q
    |||||||||| || ||||||||||   || ||| ||||||||||||||| |||||||||||||    
T  16340380 aaccccgaaccttacatattttatgcgttgttccaaccaactgaactaagctcacgaggacaa 16340318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 26682215 - 26682253
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaaccctttaa 377  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  26682215 aacatgtgcaaatttgcacatgatagaaaaaccctttaa 26682253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 27134418 - 27134483
Alignment:
Q  253 cggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacga 318  Q
    |||||||| ||||||| ||||| ||||| ||||| ||| |||| |||||||||  |||||||||||    
T  27134418 cggagtttgaaccccggactttgcatatattatacattgttcataccaactgagttaaactcacga 27134483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 30414798 - 30414679
Alignment:
Q  22 ggttctttaaccatttagttaaaagatttgattgtggcttatgcatataaaaattcaaatgttgggatggatcaatatcttaattaaatctcaatcatct 121  Q
    ||||||||||| ||||||||||| |||||||||||||  ||||||| || |||     || ||  ||||||||||| |||||| ||||||||| |||||     
T  30414798 ggttctttaac-atttagttaaa-gatttgattgtggtatatgcatgtagaaaaaactatattacgatggatcaatctcttaaataaatctcagtcatcc 30414701  T
Q  122 tagattattagtctttgtaaag 143  Q
    | ||| | ||||||||||||||    
T  30414700 ttgatgaatagtctttgtaaag 30414679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 30439701 - 30439636
Alignment:
Q  87 gatggatcaatatcttaattaaatctcaatcatcttagattattagtctttgtaaaggtcgactta 152  Q
    ||||||| ||| ||| || || |||||||||||||  ||| |||||||||||||||||| ||||||    
T  30439701 gatggattaatctctaaaatagatctcaatcatctatgatgattagtctttgtaaaggttgactta 30439636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 8544598 - 8544666
Alignment:
Q  254 ggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggac 322  Q
    ||||||| ||||||  || || ||||||||||| ||||||| |||| ||||| |||| |||||||||||    
T  8544598 ggagtttgaaccccagaccttgcatattttatacattattccaaccgactgagctaagctcacgaggac 8544666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 10129250 - 10129286
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  10129250 aacatgtgcaaatttgcacatgatagaaaaacccttt 10129286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 17058984 - 17059049
Alignment:
Q  250 ggccggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactca 315  Q
    |||||||||||||||| ||||| || ||||||||||||||| |||| ||||||||| |||| ||||    
T  17058984 ggccggagtttaaacctcgaaccttgcatattttatatattgttcataccaactgatctaagctca 17059049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 32006566 - 32006495
Alignment:
Q  250 ggccggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgagga 321  Q
    ||||||||||| ||||||||||||| ||||| ||||  ||||| |  ||||||||| |||||||||||||||    
T  32006566 ggccggagtttgaaccccgaactttacatatattatgcattatccctaccaactgagctaaactcacgagga 32006495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 24378373 - 24378424
Alignment:
Q  277 atattttatatattattcaaaccaactgaactaaactcacgaggacaatgaa 328  Q
    |||||||||  ||||||| |||||||||| |||||||||||||||| |||||    
T  24378373 atattttattcattattccaaccaactgagctaaactcacgaggaccatgaa 24378424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 39606569 - 39606635
Alignment:
Q  257 gtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggacaa 324  Q
    |||| |||| |||||||| ||||||||||| ||| ||||| |||||||| |||| |||||||||||||    
T  39606569 gtttgaacctcgaactttacatattttatacattgttcaa-ccaactgagctaagctcacgaggacaa 39606635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 50352449 - 50352484
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaaccctt 374  Q
    |||||||||||||||||||||| |||||||||||||    
T  50352449 aacatgtgcaaatttgcatatgatagaaaaaccctt 50352484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 21052578 - 21052627
Alignment:
Q  276 catattttatatattattcaaaccaactgaactaaactcacgaggacaat 325  Q
    ||||| |||| |||||| || ||||||||| |||||||||||||||||||    
T  21052578 catatattatgtattatccataccaactgagctaaactcacgaggacaat 21052627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 37725723 - 37725788
Alignment:
Q  257 gtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggac 322  Q
    ||||||||||||||| || ||||||||||| ||| | | ||| |||||| |||| |||||||||||    
T  37725723 gtttaaaccccgaaccttgcatattttatacattgtcccaacaaactgagctaagctcacgaggac 37725788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 47677579 - 47677645
Alignment:
Q  257 gtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggaca 323  Q
    |||| |||||||||| || ||||||||||  ||| ||| |||||||||| |||||||||||||||||    
T  47677579 gtttgaaccccgaacattgcatattttatgcattgttctaaccaactgagctaaactcacgaggaca 47677645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 23198751 - 23198816
Alignment:
Q  257 gtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggac 322  Q
    |||| ||||||| ||||| ||||||||||  ||| |||| |||||||||  |||||||||||||||    
T  23198751 gtttgaaccccggactttgcatattttatgcattgttcataccaactgagttaaactcacgaggac 23198816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 46290157 - 46290194
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttta 376  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  46290157 aacatgtgcaaatttgcacatgatagaaaaacccttta 46290194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 28061354 - 28061318
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| |||||||||||| |||||    
T  28061354 aacatgtgcaaatttgcacatgttagaaaaatccttt 28061318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 27903176 - 27903110
Alignment:
Q  253 cggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgag 319  Q
    |||||||| |||||||||| || ||||| ||||  ||| |||| |||||||||||||||||||||||    
T  27903176 cggagtttgaaccccgaaccttgcatatattatgcattgttcataccaactgaactaaactcacgag 27903110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 2839861 - 2839791
Alignment:
Q  253 cggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggaca 323  Q
    |||||||| |||||||||| ||  |||| ||||  ||||| |||||||||||| |||| ||||||||||||    
T  2839861 cggagtttgaaccccgaaccttggatatattatgcattatccaaaccaactgagctaagctcacgaggaca 2839791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 3630698 - 3630653
Alignment:
Q  277 atattttatatattattcaaaccaactgaactaaactcacgaggac 322  Q
    |||||||||||||| ||| |||||||||| |||| |||||||||||    
T  3630698 atattttatatattgttccaaccaactgagctaagctcacgaggac 3630653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 16193147 - 16193102
Alignment:
Q  276 catattttatatattattcaaaccaactgaactaaactcacgagga 321  Q
    ||||||||||  ||| |||| |||||||||||||||||||||||||    
T  16193147 catattttatgcattgttcataccaactgaactaaactcacgagga 16193102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 24158977 - 24159022
Alignment:
Q  266 ccgaacttttcatattttatatattattcaaaccaactgaactaaa 311  Q
    ||||||||| ||||||||||| ||| ||| ||||||||||||||||    
T  24158977 ccgaactttgcatattttatacattgttccaaccaactgaactaaa 24159022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 36597726 - 36597763
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttta 376  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  36597726 aacatgtgcaaatttgcacatgatagaaaaacccttta 36597763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 4047559 - 4047595
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  4047559 aacatgtgcaaatttgcacatgatagaaaaacccttt 4047595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 30839928 - 30839964
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  30839928 aacatgtgcaaatttgcacatgatagaaaaacccttt 30839964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 31705076 - 31705120
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaaccctttaatgaata 383  Q
    |||||||||||||||||| |||||||||||| || | ||||||||    
T  31705076 aacatgtgcaaatttgcacatgttagaaaaatccataaatgaata 31705120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 917 - 982
Alignment:
Q  250 ggccggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactca 315  Q
    |||||||||||||| | ||||| || ||||||||||||||| |||| ||||||||| |||| ||||    
T  917 ggccggagtttaaatctcgaaccttgcatattttatatattgttcataccaactgatctaagctca 982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 52043327 - 52043266
Alignment:
Q  262 aaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggaca 323  Q
    |||||||||| || ||||||||||  ||||| || ||||||||| |||||||||||||||||    
T  52043327 aaccccgaacattgcatattttatgcattatccataccaactgagctaaactcacgaggaca 52043266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 6307499 - 6307535
Alignment:
Q  327 aagggtttgtcgaacatgtgcaaatttgcatatgtta 363  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  6307499 aagggtttgtctaacatgtgcaaaattgcatatgtta 6307535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 13590169 - 13590101
Alignment:
Q  257 gtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggacaat 325  Q
    |||| ||| |||||| || ||||||||||  ||| | |||||||||||| |||| ||||||||||||||    
T  13590169 gtttgaactccgaaccttacatattttatgcattgtccaaaccaactgagctaagctcacgaggacaat 13590101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 20481159 - 20481091
Alignment:
Q  257 gtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggacaat 325  Q
    |||| ||| |||||| || |||| |||||  ||| |||||||||||||| |||| ||||||||||||||    
T  20481159 gtttgaactccgaaccttgcataatttatgcattgttcaaaccaactgagctaagctcacgaggacaat 20481091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 24695618 - 24695554
Alignment:
Q  257 gtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgagga 321  Q
    |||| |||| |||| ||| ||||| |||| |||| |||| ||||||||| |||||||||||||||    
T  24695618 gtttgaacctcgaattttgcatatattatgtattgttcataccaactgagctaaactcacgagga 24695554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 42589204 - 42589168
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| |||||||||||| |||||    
T  42589204 aacatgtgcaaatttgcacatgttagaaaaatccttt 42589168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 44013072 - 44013108
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| |||||||||||| |||||    
T  44013072 aacatgtgcaaatttgcacatgttagaaaaatccttt 44013108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 51046205 - 51046137
Alignment:
Q  253 cggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgagga 321  Q
    |||||||  ||| |||||| || |||||||||| |||| |||| |||||||||  ||||||||||||||    
T  51046205 cggagttcgaactccgaaccttacatattttatgtattgttcataccaactgagttaaactcacgagga 51046137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 37145 - 37107
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaaccctttaa 377  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  37145 aacatgtgcaaatttgcacatgatagaaaaaccctttaa 37107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 12256535 - 12256470
Alignment:
Q  257 gtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggaca 323  Q
    |||||||||||  ||||| ||||||||||  ||||||||| |||||||| |||| ||||||||||||    
T  12256535 gtttaaaccccagactttacatattttatgcattattcaa-ccaactgagctaagctcacgaggaca 12256470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 9445011 - 9444950
Alignment:
Q  262 aaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggaca 323  Q
    ||||| |||| || ||||||||||| ||| |||| ||||||||| |||| ||||||||||||    
T  9445011 aaccctgaaccttgcatattttatacattgttcataccaactgagctaagctcacgaggaca 9444950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 8467800 - 8467836
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  8467800 aacatgtacaaatttgcatatgatagaaaaacccttt 8467836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 4332665 - 4332735
Alignment:
Q  253 cggagtttaaaccccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggaca 323  Q
    |||||||| ||||||| || ||  |||| ||||  |||||||||||||||||| |||| ||||||||||||    
T  4332665 cggagtttgaaccccggaccttggatatattatgcattattcaaaccaactgagctaagctcacgaggaca 4332735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 48531329 - 48531272
Alignment:
Q  265 cccgaacttttcatattttatatattattcaaaccaactgaactaaactcacgaggac 322  Q
    ||||||| || |||||||||| |||||| | |||||||||| |||| |||||||||||    
T  48531329 cccgaaccttgcatattttatgtattatcccaaccaactgagctaagctcacgaggac 48531272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 9598479 - 9598431
Alignment:
Q  276 catattttatatattattcaaaccaactgaactaaactcacgaggacaa 324  Q
    ||||||||||| ||| | | ||||||||||||||| |||||||||||||    
T  9598479 catattttatacattgtcccaaccaactgaactaagctcacgaggacaa 9598431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 10307913 - 10307949
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  10307913 aacatgtgcaaatttgcacatgatagaaaaacccttt 10307949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 13495325 - 13495289
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| |||||||| |||||||||    
T  13495325 aacatgtgcaaatttgcacatgttagacaaacccttt 13495289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 13495290 - 13495326
Alignment:
Q  327 aagggtttgtcgaacatgtgcaaatttgcatatgtta 363  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  13495290 aagggtttgtctaacatgtgcaaatttgcacatgtta 13495326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 23523093 - 23523129
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  23523093 aacatgtgcaaatttgcacatgatagaaaaacccttt 23523129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 29932383 - 29932347
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| |||||||||||| |||||    
T  29932383 aacatgtgcaaatttgcacatgttagaaaaatccttt 29932347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 29981537 - 29981501
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| |||||||||||| |||||    
T  29981537 aacatgtgcaaatttgcacatgttagaaaaatccttt 29981501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 50204550 - 50204586
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  50204550 aacatgtgcaaatttgcacatgatagaaaaacccttt 50204586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 8065270 - 8065308
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaaccctttaa 377  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  8065270 aacatgtgcaaatttgcacatgatagaaaaaccctttaa 8065308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Complemental strand, 43941885 - 43941847
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaaccctttaa 377  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  43941885 aacatgtgcaaatttgcacatgttagaaaaatcctttaa 43941847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 8847934 - 8847971
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttta 376  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  8847934 aacatgtgcaaatttgcacatgttagaaaaatccttta 8847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 27665073 - 27665036
Alignment:
Q  341 catgtgcaaatttgcatatgttagaaaaaccctttaat 378  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  27665073 catgtgcaaatttgcacatgatagaaaaaccctttaat 27665036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 3951282 - 3951246
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| |||||||||||| |||||    
T  3951282 aacatgtgcaaatttgcacatgttagaaaaatccttt 3951246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 3951397 - 3951433
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| |||||||||||| |||||    
T  3951397 aacatgtgcaaatttgcacatgttagaaaaatccttt 3951433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 29157860 - 29157824
Alignment:
Q  339 aacatgtgcaaatttgcatatgttagaaaaacccttt 375  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  29157860 aacatgtgcaaatttgcacatgatagaaaaacccttt 29157824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 118859 - 118810
Alignment:
Q  276 catattttatatattattcaaaccaactgaactaaactcacgaggacaat 325  Q
    ||||||||||  ||| |||||||||||||| |||| ||||||||||||||    
T  118859 catattttatgcattgttcaaaccaactgagctaagctcacgaggacaat 118810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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