View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_17 (Length: 466)
Name: NF20764_high_17
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 10995219 - 10994785
Alignment:
| Q |
16 |
ataagcccaatcttattatctaacaaatgagacaacaatcactagaagatttagaaatcgctcttgaactagaatcagcctgcttcatctccttcacatc |
115 |
Q |
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| T |
10995219 |
ataagcccaatcttattatctaacaaatgagacaacaatcactagaagatttagaaatcgctcttgaactagaatcagcctgcttcatctccttcacatc |
10995120 |
T |
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| Q |
116 |
agagactcggtacagcgagacacccccataaaactgcttgtatcaagttgctgatgaagataaaatcctacttgcatagagctaaaagaagaagaatagt |
215 |
Q |
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| T |
10995119 |
agagactcggtacagcgagacacccccataaaactgcttgtatcaagttgctgatgaagataaaatcctacttgcatagagctaaaagaagaagaatagt |
10995020 |
T |
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| Q |
216 |
cttctttttatagaggagcgctacaaattgcattcacaattagtagttggaaatgtattcattttagataagccgaaattaattctgaagagtgcatgag |
315 |
Q |
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| T |
10995019 |
cttctttttatagaggagcgctacaaattgcattcacaattagtagttggaaatgtattcattttagataagccaaaattaattctgaagagtgcatgag |
10994920 |
T |
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| Q |
316 |
tgacatagaatactataactttataccttaaatgttgcaacagctttggtgacattcttggtcccttaatattttgtttcaataaccttttgagcatttt |
415 |
Q |
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| T |
10994919 |
tgacatagaatactataactttataccttaaatgttgcaacagctttggtgacattcttggtcccttaatattttgtttcaataaccttttgagcatttt |
10994820 |
T |
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| Q |
416 |
caacagaattatcagaccaaaagattgaaagtaaa |
450 |
Q |
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| T |
10994819 |
caacagaattatcagaccaaaagattgaaagtaaa |
10994785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 240 - 386
Target Start/End: Complemental strand, 10999213 - 10999068
Alignment:
| Q |
240 |
aaattgcattcacaattagtagttggaaatgtattcattttagataagccgaaattaattctgaagagtgcatgagtgacatagaatactataactttat |
339 |
Q |
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| T |
10999213 |
aaattgcattcacactcagtagttggaaatgtattcattttagata-gccgaaattaattctttcgagtgcatgaatgacatagaatactataactttat |
10999115 |
T |
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| Q |
340 |
accttaaatgttgcaacagctttggtgacattcttggtcccttaata |
386 |
Q |
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| T |
10999114 |
accttaaatgaaggaacaacttcaataacattattggtcccttaata |
10999068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 11000614 - 11000533
Alignment:
| Q |
16 |
ataagcccaatcttattatctaacaaatgagacaacaatcactagaagatttagaaatcgctcttgaactagaatcagcctg |
97 |
Q |
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| T |
11000614 |
ataagcccaatcttattatctaacaaattagacaacaatcactagaagatttaaaaatcgctcttgaactagaatcagcctg |
11000533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 433
Target Start/End: Complemental strand, 10898803 - 10898752
Alignment:
| Q |
382 |
taatattttgtttcaataaccttttgagcattttcaacagaattatcagacc |
433 |
Q |
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| T |
10898803 |
taataatttgtttcaataaccttgcgagcattttcaacagagttatcagacc |
10898752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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