View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_19 (Length: 450)
Name: NF20764_high_19
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 51418406 - 51417972
Alignment:
| Q |
1 |
ttttcctctcttcatcacttcttgcatatcctgcataactctatgactcttagagacaccgttttgtatcagaaaacctagtaaacgcacagttttgctc |
100 |
Q |
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| T |
51418406 |
ttttcctctcttcatcacttcttgcatatcctgcataactctatgactcttagagacaccgttttgtatcagaaaacctagtaaacgcacagttttgctc |
51418307 |
T |
|
| Q |
101 |
actttctcaattaccaccgttggttgtttatccatgcatgtaatgtctgtaacattgttagggagacaccactctgtttctgtgtctagtttcattaatg |
200 |
Q |
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| T |
51418306 |
actttctcaattaccaccgttggttgtttatccatgcatgtaatgtctgtaacattgttagggagacaccaatctgtttctgtgtctagtttcattaatg |
51418207 |
T |
|
| Q |
201 |
attagcaatttatgggagagaaagaacagcaaaattgtaacaaaggcaatgggattattggttaagatctgtgttagttttgtgagggaagacttgtgag |
300 |
Q |
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| T |
51418206 |
attagcaatttatgggagagaaagaacagcaaaattgtaacaaaggcaatgggattattggttaagatctgtgttagttttgtgagggaagacttgtgag |
51418107 |
T |
|
| Q |
301 |
ttatactcctatgaatttaaaggaaagaaaaagttaggacaagggcaaagaaagagagagaatgttggtttgatttgatgttgctgttttggatattgaa |
400 |
Q |
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| T |
51418106 |
t--tactcctatgaatttaaaggaaagaaaaagttaggacaagggcaaagaaagagagagaatgttggtttgatttgatgttgctgttttggatattgaa |
51418009 |
T |
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| Q |
401 |
gaatattgataggtagctatagtagtgaagtataatc |
437 |
Q |
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| T |
51418008 |
gaatattgttaggtagctatagtagtgaagtataatc |
51417972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 51413349 - 51413158
Alignment:
| Q |
5 |
cctctcttcatcacttcttgcatatcctgcataactctatgactcttagagacaccgttttgtatcagaaaacctagtaaacgcacagttttgctcactt |
104 |
Q |
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|||||||||||||||||||||||||| || || ||||| | ||||||||||||||||||||||| || ||||||||||||||||| |||||||||| || |
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| T |
51413349 |
cctctcttcatcacttcttgcatatcttgtatcactctgttactcttagagacaccgttttgtaacatgaaacctagtaaacgcaccgttttgctcaatt |
51413250 |
T |
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| Q |
105 |
tctcaattaccaccgttggttgtttatccatgcatgtaatgtctgtaacattgttagggagacaccactctgtttctgtgtctagtttcatt |
196 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | ||||||||| |
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| T |
51413249 |
tctcaatcaccaccgttggttggttatccatgcatgtaatgtctgtcacattattagggagacagcactctgtttctgtatgaagtttcatt |
51413158 |
T |
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