View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_high_2 (Length: 805)

Name: NF20764_high_2
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_high_2
NF20764_high_2
[»] chr5 (27 HSPs)
chr5 (17-212)||(5173841-5174036)
chr5 (557-787)||(5173546-5173778)
chr5 (229-376)||(34225921-34226068)
chr5 (230-376)||(25981382-25981528)
chr5 (377-557)||(25981135-25981310)
chr5 (230-376)||(3059215-3059361)
chr5 (377-486)||(3059035-3059144)
chr5 (389-557)||(34225676-34225836)
chr5 (377-557)||(14395972-14396155)
chr5 (234-343)||(26326936-26327045)
chr5 (233-309)||(33798715-33798791)
chr5 (313-376)||(14395838-14395901)
chr5 (233-309)||(33727436-33727512)
chr5 (233-318)||(13475557-13475642)
chr5 (248-318)||(11773293-11773363)
chr5 (508-554)||(18113834-18113880)
chr5 (502-538)||(3058979-3059015)
chr5 (229-277)||(14395785-14395833)
chr5 (444-484)||(33727279-33727319)
chr5 (444-484)||(33798562-33798602)
chr5 (508-559)||(424832-424883)
chr5 (436-486)||(26326793-26326843)
chr5 (248-290)||(39421297-39421339)
chr5 (233-302)||(971737-971806)
chr5 (505-560)||(2197406-2197464)
chr5 (508-557)||(17074567-17074616)
chr5 (502-535)||(39421044-39421077)
[»] chr3 (21 HSPs)
chr3 (225-376)||(50386082-50386233)
chr3 (229-376)||(497688-497835)
chr3 (400-557)||(50385857-50386005)
chr3 (377-558)||(497906-498085)
chr3 (233-376)||(22418770-22418913)
chr3 (233-376)||(7147179-7147322)
chr3 (509-557)||(22418553-22418601)
chr3 (228-319)||(27237341-27237432)
chr3 (230-343)||(3541693-3541805)
chr3 (699-787)||(29210796-29210881)
chr3 (505-541)||(43055605-43055641)
chr3 (502-557)||(53446022-53446077)
chr3 (502-540)||(24758602-24758640)
chr3 (502-540)||(24767599-24767637)
chr3 (511-557)||(49430633-49430679)
chr3 (233-297)||(40154756-40154820)
chr3 (233-316)||(43055292-43055375)
chr3 (233-316)||(49430482-49430565)
chr3 (508-541)||(2125280-2125313)
chr3 (508-557)||(26555476-26555525)
chr3 (508-541)||(28211742-28211775)
[»] chr2 (5 HSPs)
chr2 (230-376)||(917953-918099)
chr2 (228-300)||(41911797-41911869)
chr2 (248-303)||(9929322-9929377)
chr2 (508-557)||(16916442-16916491)
chr2 (505-554)||(37622831-37622880)
[»] chr1 (17 HSPs)
chr1 (377-557)||(38740983-38741158)
chr1 (228-376)||(50158835-50158983)
chr1 (230-376)||(38741230-38741376)
chr1 (377-557)||(2123735-2123908)
chr1 (232-373)||(33403683-33403824)
chr1 (377-557)||(50158589-50158765)
chr1 (230-354)||(2123579-2123703)
chr1 (377-557)||(33403424-33403600)
chr1 (233-343)||(11943668-11943778)
chr1 (701-787)||(7386722-7386809)
chr1 (233-364)||(37188140-37188271)
chr1 (509-557)||(37187911-37187959)
chr1 (233-318)||(32942269-32942354)
chr1 (378-549)||(5458700-5458871)
chr1 (502-554)||(32940698-32940750)
chr1 (508-555)||(18431711-18431758)
chr1 (505-540)||(29702463-29702498)
[»] chr4 (9 HSPs)
chr4 (230-376)||(2917617-2917763)
chr4 (377-557)||(2917834-2918007)
chr4 (233-365)||(15544990-15545122)
chr4 (233-318)||(47286607-47286692)
chr4 (505-558)||(51513128-51513181)
chr4 (233-316)||(4940047-4940130)
chr4 (502-557)||(28323073-28323128)
chr4 (252-318)||(18764667-18764733)
chr4 (525-558)||(15544866-15544899)
[»] chr7 (26 HSPs)
chr7 (377-557)||(46913338-46913513)
chr7 (232-376)||(46912926-46913070)
chr7 (233-343)||(36616868-36616978)
chr7 (231-309)||(46357783-46357861)
chr7 (249-376)||(28998237-28998364)
chr7 (509-557)||(28998020-28998068)
chr7 (237-300)||(4519742-4519805)
chr7 (233-300)||(42896852-42896919)
chr7 (233-376)||(46457683-46457826)
chr7 (378-486)||(18103446-18103555)
chr7 (234-318)||(33081854-33081938)
chr7 (240-328)||(18104488-18104576)
chr7 (502-540)||(41969794-41969832)
chr7 (512-557)||(46457998-46458043)
chr7 (235-376)||(23041601-23041744)
chr7 (243-318)||(31670593-31670668)
chr7 (505-540)||(42897753-42897788)
chr7 (519-557)||(36617052-36617090)
chr7 (249-343)||(43998135-43998229)
chr7 (443-487)||(4519344-4519389)
chr7 (454-487)||(7799536-7799569)
chr7 (502-535)||(19815130-19815163)
chr7 (508-541)||(38663019-38663052)
chr7 (713-770)||(42562095-42562152)
chr7 (446-486)||(42897695-42897736)
chr7 (506-551)||(46437312-46437357)
[»] chr8 (10 HSPs)
chr8 (229-376)||(29246831-29246978)
chr8 (377-557)||(29247049-29247226)
chr8 (243-343)||(35702095-35702195)
chr8 (236-376)||(14442979-14443119)
chr8 (509-558)||(33619647-33619696)
chr8 (228-311)||(7351391-7351474)
chr8 (402-481)||(16431408-16431487)
chr8 (233-302)||(11920631-11920700)
chr8 (509-554)||(14442765-14442810)
chr8 (508-557)||(28535193-28535242)
[»] chr6 (10 HSPs)
chr6 (224-340)||(595701-595817)
chr6 (502-550)||(595534-595582)
chr6 (233-365)||(6174377-6174509)
chr6 (378-461)||(595603-595687)
chr6 (505-556)||(841944-841995)
chr6 (235-318)||(13850731-13850814)
chr6 (233-309)||(843648-843724)
chr6 (508-559)||(5014169-5014220)
chr6 (454-487)||(842008-842041)
chr6 (511-540)||(13850509-13850538)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 4e-99; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 5174036 - 5173841
Alignment:
Q  17 gaatatgttgcaacaatatcccgccaaagtcttattcaagaaccaagaggctctattttgaattattaaagttggggcacaacgagcatttgattattgg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5174036 gaatatgttgcaacaatatcccgccaaagtcttattcaagaaccaagaggctctattttgaattcttaaagttggggcacaacgagcatttgattattgg 5173937  T
Q  117 gataggattgggatggcttatcgggtcagctgaagcattaatcctatgtttgatattattgtggatatcttagaatcacagtgatctaccgtgatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5173936 gataggattgggatggcttatcgggtcagctgaagcattaagcctatgtttgatattatcgtggatatcttagaatcacagtgatctaccgtgatt 5173841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 557 - 787
Target Start/End: Complemental strand, 5173778 - 5173546
Alignment:
Q  557 gtttgtgtgataccaaacacacactaaggcagttcaaacattgctttagccgttaaatctagctcaaactaaagttatcacaggtatttgtatatttata 656  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||    
T  5173778 gtttgtgtgataccaaacacacactaaggcatttcaaacgttgctttagccgttaaatctggctcaaaataaagttatcacaagtatttgtatatttata 5173679  T
Q  657 agaaaaatgttaagagtgtcatttagttgtc-nnnnnnnagcgaaggcaaaactagttcatttcattaatgatcaaagagtataaattaaagggtacatc 755  Q
    || ||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5173678 aggaaaatgtcaagagtgtcatttagttgtcttttttttagcgaaggcaaaactagttcatttcattaatgatcaaagagtacaaattaaagggtacatc 5173579  T
Q  756 ataaaaaacat-ggggttgggattagataaaga 787  Q
    ||||||||||| ||||||| |||||||||||||    
T  5173578 ataaaaaacatgggggttgagattagataaaga 5173546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 229 - 376
Target Start/End: Complemental strand, 34226068 - 34225921
Alignment:
Q  229 gcatgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagat 328  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||    
T  34226068 gcatgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaactttgataacttaaatgttatagat 34225969  T
Q  329 aaatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    || |||||||||||| ||| ||||||||||||||||||||||||||||    
T  34225968 aagtggtttgggtgactgcattttaccttgttgttactagttcgattc 34225921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 25981528 - 25981382
Alignment:
Q  230 catgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagata 329  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  25981528 catgggcggatctagacattcgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 25981429  T
Q  330 aatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    | |||||||||||| ||| ||||||||||||||||||||||||||||    
T  25981428 agtggtttgggtgactgcgttttaccttgttgttactagttcgattc 25981382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 377 - 557
Target Start/End: Complemental strand, 25981310 - 25981135
Alignment:
Q  377 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtca 476  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25981310 actcagcacattcaattcgtccatcagcacataccattgagccaagaaagaagttctgatatgtttgcgacttatattatatatataataatttaagtca 25981211  T
Q  477 agtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||               ||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25981210 agtatatgaa-----aaaaaaaaaggggaataatttggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 25981135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 3059361 - 3059215
Alignment:
Q  230 catgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagata 329  Q
    |||||| |||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  3059361 catgggtggatctagacatttgatattggtgtggcaaaactttcaaagtaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 3059262  T
Q  330 aatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    | || ||||||||| ||| |||||||||||||||||||||| |||||    
T  3059261 agtgatttgggtgactgcgttttaccttgttgttactagtttgattc 3059215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 377 - 486
Target Start/End: Complemental strand, 3059144 - 3059035
Alignment:
Q  377 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtca 476  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  3059144 actcaacacattcaattcgtccatccgcacataccactgagccaagaaagaagttctaatatgtttgcgacttatattatatatataataatttaagtca 3059045  T
Q  477 agtatatgaa 486  Q
    ||||||||||    
T  3059044 agtatatgaa 3059035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 389 - 557
Target Start/End: Complemental strand, 34225836 - 34225676
Alignment:
Q  389 caattcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtcaagtatatgaagn 488  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||      
T  34225836 caattcatccatccgcacataccactaagccaagaaagaagttctaatatgtttgcgacttatattatatatataataatttaagtcaagtatatgaa-- 34225739  T
Q  489 nnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
                  |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  34225738 ------aaaaaagaggaataatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 34225676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 377 - 557
Target Start/End: Original strand, 14395972 - 14396155
Alignment:
Q  377 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttc-tggtatgtttgcgacttatattatatatataataatttaagtc 475  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||| | |||||||||||||||||||||||||||||||    
T  14395972 actcagcacattcaattcgtccatcagcacataccattgagccaagaaagaagttcataatatgttggggacttatattatatatataataatttaagtc 14396071  T
Q  476 aagtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgcc------acaccatgtttcactgtagatccgcccctg 557  Q
    |||||||||||               ||||||||||||||||||||||||||      ||||||||||||||||| ||||||||||||    
T  14396072 aagtatatgaa----aaaaaaaaaaggggaataatctggtgtggcaactgccattgccacaccatgtttcactgtggatccgcccctg 14396155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 26327045 - 26326936
Alignment:
Q  234 ggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaatg 333  Q
    ||||||||||||| |||||||||||| | ||||||||||||||| |||||  ||||||||||||||| |||||||| |  |||||   |||||| |||||    
T  26327045 ggcggatctagacatttgatattggtgtagcaaaactttcaaagaaactatgtatattaacaaagtagaacattgacactttaaacaatatagaaaaatg 26326946  T
Q  334 gtttgggtga 343  Q
    ||||| ||||    
T  26326945 gtttgcgtga 26326936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 33798791 - 33798715
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattga 309  Q
    |||||||||||||| |||||||||||| |||||||||||||||| |||||| || ||||||||||||| | ||||||    
T  33798791 gggcggatctagacatttgatattggtttggcaaaactttcaaaacaactatatgtattaacaaagtagaccattga 33798715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 14395838 - 14395901
Alignment:
Q  313 cttaaatgctatagataaatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||    
T  14395838 cttaaatgctatagataaatggtttgggtggctgcgttttaccttgttgttactagttcaattc 14395901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 33727512 - 33727436
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattga 309  Q
    |||||||||||||| |||||||||||| ||| ||||||||||||  ||||| |||||||||||||||| | ||||||    
T  33727512 gggcggatctagacatttgatattggtttggtaaaactttcaaaataactatatatattaacaaagtagaccattga 33727436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 13475557 - 13475642
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaa 318  Q
    ||||||||| |||| |||||||||||| ||||||||  |||||| |||||| || |||||||||||||||  ||||||| ||||||    
T  13475557 gggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 13475642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 318
Target Start/End: Complemental strand, 11773363 - 11773293
Alignment:
Q  248 tttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaa 318  Q
    |||||| ||||| |||||||| ||||||||||| || ||||||||| |||||||| |||||||| ||||||    
T  11773363 tttgattttggtgtggcaaaattttcaaagcaattatatatattaataaagtaaagcattgataccttaaa 11773293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 18113834 - 18113880
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcactgtagatccgccc 554  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||    
T  18113834 aatctggtgtggcaactgccacaccatgtttcaatgtacatccgccc 18113880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 538
Target Start/End: Complemental strand, 3059015 - 3058979
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatgttt 538  Q
    |||||||||||||||||||||||||||||||||||||    
T  3059015 gggaataatctggtgtggcaactgccacaccatgttt 3058979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 14395785 - 14395833
Alignment:
Q  229 gcatgggcggatctagacttttgatattggtctggcaaaactttcaaag 277  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||    
T  14395785 gcatgggcggatctagacatttgatattggtgcggcaaaactttcaaag 14395833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 33727319 - 33727279
Alignment:
Q  444 cgacttatattatatatataataatttaagtcaagtatatg 484  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  33727319 cgacttatattatatatataattatttaagtcaagtatatg 33727279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 33798602 - 33798562
Alignment:
Q  444 cgacttatattatatatataataatttaagtcaagtatatg 484  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  33798602 cgacttatattatatatataattatttaagtcaagtatatg 33798562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 424832 - 424883
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctgtt 559  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||| ||||    
T  424832 aatctggtgtggcagctgccacaccatgtttcaatgtacatccgcccatgtt 424883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 26326843 - 26326793
Alignment:
Q  436 tatgtttgcgacttatattatatatataataatttaagtcaagtatatgaa 486  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||| ||||||    
T  26326843 tatgttagcgacttatattatatatataattatttaagtccagtgtatgaa 26326793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 39421339 - 39421297
Alignment:
Q  248 tttgatattggtctggcaaaactttcaaagcaactacatatat 290  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  39421339 tttgatattggtgtggcaaaactttcaaagcaactatatatat 39421297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 971737 - 971806
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaa 302  Q
    ||||||||| |||| ||||||| | || ||||||||| |||||| |||||| || |||||||||||||||    
T  971737 gggcggatccagacatttgataatagtgtggcaaaacattcaaatcaactatatttattaacaaagtaaa 971806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 505 - 560
Target Start/End: Complemental strand, 2197464 - 2197406
Alignment:
Q  505 aataatctggtgtggc---aactgccacaccatgtttcactgtagatccgcccctgttt 560  Q
    ||||||||||||||||   ||||||||||||||||||||| || |||||||| ||||||    
T  2197464 aataatctggtgtggcggcaactgccacaccatgtttcacggtggatccgcctctgttt 2197406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 17074616 - 17074567
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||| |||||| |||||||||||||  ||||||||| ||||||||||    
T  17074616 aatctggagtggcagctgccacaccatgcctcactgtagttccgcccctg 17074567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 535
Target Start/End: Complemental strand, 39421077 - 39421044
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatg 535  Q
    ||||||||||||||||||||| ||||||||||||    
T  39421077 gggaataatctggtgtggcaattgccacaccatg 39421044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 50386233 - 50386082
Alignment:
Q  225 gtgtgcatgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctat 324  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  50386233 gtgtccatgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctat 50386134  T
Q  325 agataaatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  50386133 agataagtggtttgggtgattgcgttttaccttgttgttactagttcgattc 50386082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 229 - 376
Target Start/End: Original strand, 497688 - 497835
Alignment:
Q  229 gcatgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagat 328  Q
    |||||||||||||||||| | |||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  497688 gcatgggcggatctagacatatgatattggtgtggcaaaactttcaaatcaactatatatattaacaaagtaaaacattaataccttaaatgctatagat 497787  T
Q  329 aaatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    || |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  497788 aagtggtttgggtgactgcgtttaaccttgttgttactagttcgattc 497835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 400 - 557
Target Start/End: Complemental strand, 50386005 - 50385857
Alignment:
Q  400 tcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtcaagtatatgaagnnnnnnnnnnnn 499  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  50386005 tcagcacataccattgagccaagaaagaagttctgatatgtttgcgacttatattatatatataataatttaagtcaagtatatgaa---------aaaa 50385915  T
Q  500 nngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  50385914 aagggaataatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 50385857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 377 - 558
Target Start/End: Original strand, 497906 - 498085
Alignment:
Q  377 actcagcacattca--attcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagt 474  Q
    ||||||||||||||  |||  |||||| ||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  497906 actcagcacattcacaatttatccatccgcacaaaccactgagccaagaaagaagttctgatatgtttgtgatttatattatatatataataatttaagt 498005  T
Q  475 caagtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctgt 558  Q
    ||||||||| ||               ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  498006 caagtatattaa----aaaaaaaaaaagggaataatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctgt 498085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 233 - 376
Target Start/End: Complemental strand, 22418913 - 22418770
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaat 332  Q
    ||||||||| ||||  ||||||||||| |||||||| || ||||||||||| |||||||||||||||||| | || | ||||||||  ||||||  || |    
T  22418913 gggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaagctttaacaacttaaaaactatagcaaagt 22418814  T
Q  333 ggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    |||||||||||  || ||||||| || ||||||  |||||||||    
T  22418813 ggtttgggtgagagcattttaccatggtgttacaggttcgattc 22418770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 7147179 - 7147322
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaat 332  Q
    ||||||||||||||  ||||||||||| |||||||| || ||||| ||||| ||||||||||||| |||| | || | ||||||||  ||||||  || |    
T  7147179 gggcggatctagacagttgatattggtgtggcaaaatttgcaaagaaactatatatattaacaaaataaagctttaacaacttaaaaactatagcaaagt 7147278  T
Q  333 ggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    |||||||||||  || ||||||| || ||||||  |||||||||    
T  7147279 ggtttgggtgaaagcattttaccatggtgttacaggttcgattc 7147322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 509 - 557
Target Start/End: Complemental strand, 22418601 - 22418553
Alignment:
Q  509 atctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22418601 atctggtgtggcaactgccacaccatgtttcacagtagatccgcccctg 22418553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 27237341 - 27237432
Alignment:
Q  228 tgcatgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaat 319  Q
    |||| ||||||||| |||| |||||||||||| ||||||||  |||||| |||||| || |||||||||||||||  ||||||| |||||||    
T  27237341 tgcaggggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgatatcttaaat 27237432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 3541693 - 3541805
Alignment:
Q  230 catgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagata 329  Q
    ||||| |||||  |||| |||||||||||| || ||||| |||||||| ||||| ||||||||| ||||| || |||||| |||||||||  | |||| |    
T  3541693 catggacggatgcagacatttgatattggtgtgacaaaattttcaaagtaactatatatattaataaagtgaagcattgacaacttaaatagtctaga-a 3541791  T
Q  330 aatggtttgggtga 343  Q
    ||||||||||||||    
T  3541792 aatggtttgggtga 3541805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 699 - 787
Target Start/End: Original strand, 29210796 - 29210881
Alignment:
Q  699 aaggcaaaactagttcatttcattaatgatcaaagagtataaattaaagggtacatcataaaaaacat-ggggttgggattagataaaga 787  Q
    |||| ||||||| ||||||||||| ||    |||||||| |||||||| |||||||||||||||| || |||||| ||||||||||||||    
T  29210796 aaggtaaaactaattcatttcattcat----aaagagtacaaattaaaaggtacatcataaaaaatatgggggttaggattagataaaga 29210881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 541
Target Start/End: Original strand, 43055605 - 43055641
Alignment:
Q  505 aataatctggtgtggcaactgccacaccatgtttcac 541  Q
    |||||||||||||||||||||||||||||||||||||    
T  43055605 aataatctggtgtggcaactgccacaccatgtttcac 43055641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 502 - 557
Target Start/End: Original strand, 53446022 - 53446077
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||||||||||||| |||||||||||||||||  ||  |||||||||||    
T  53446022 gggaataatctggtgtggcaagtgccacaccatgtttcaaggtgaatccgcccctg 53446077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 24758602 - 24758640
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatgtttca 540  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  24758602 gggaataatctggtgtggcaagtgccacaccatgtttca 24758640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 24767599 - 24767637
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatgtttca 540  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  24767599 gggaataatctggtgtggcaagtgccacaccatgtttca 24767637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 511 - 557
Target Start/End: Original strand, 49430633 - 49430679
Alignment:
Q  511 ctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||    
T  49430633 ctggtgtggcaactgccacaccatgtttcaaagtggatccgcccctg 49430679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 40154756 - 40154820
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaa 297  Q
    ||||||| |||||||||||||||| || |||| ||| | |||||| ||||| |||||||||||||    
T  40154756 gggcggacctagacttttgatattagtgtggctaaaatatcaaagaaactatatatattaacaaa 40154820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 43055292 - 43055375
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataactta 316  Q
    |||||||||||||   ||||||||||| |||||||| || ||||| ||||| ||||||||| ||| |||| | |||| ||||||    
T  43055292 gggcggatctagagagttgatattggtgtggcaaaatttgcaaagaaactatatatattaataaattaaatctttgacaactta 43055375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 49430482 - 49430565
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataactta 316  Q
    |||||||||||||   ||||||||||| || ||||| ||  |||| ||||| |||||||||||||||||| | |||| ||||||    
T  49430482 gggcggatctagagagttgatattggtgtgacaaaatttgtaaagaaactatatatattaacaaagtaaagctttgacaactta 49430565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 541
Target Start/End: Complemental strand, 2125313 - 2125280
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcac 541  Q
    |||||||||||||| |||||||||||||||||||    
T  2125313 aatctggtgtggcagctgccacaccatgtttcac 2125280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 26555525 - 26555476
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    |||||||||||||| |||||||||||||||||||  |  |||||||||||    
T  26555525 aatctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 26555476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 541
Target Start/End: Original strand, 28211742 - 28211775
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcac 541  Q
    |||||||||||||| |||||||||||||||||||    
T  28211742 aatctggtgtggcagctgccacaccatgtttcac 28211775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 918099 - 917953
Alignment:
Q  230 catgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagata 329  Q
    |||||||||||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  918099 catgggcggatctaaacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 918000  T
Q  330 aatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||    
T  917999 agtggtttgggtgattgcgttttaccttgttgttactagttcgattc 917953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 41911869 - 41911797
Alignment:
Q  228 tgcatgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagta 300  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  41911869 tgcatgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaacaatatatattaacaaagta 41911797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 9929377 - 9929322
Alignment:
Q  248 tttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaa 303  Q
    |||||| ||||| ||||||||||||||||| || || |||||||||||||||||||    
T  9929377 tttgattttggtgtggcaaaactttcaaagaaaatatatatattaacaaagtaaaa 9929322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 557
Target Start/End: Original strand, 16916442 - 16916491
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    |||||||||||||| ||| |||||||||||||||| || |||||||||||    
T  16916442 aatctggtgtggcagctgacacaccatgtttcactctacatccgcccctg 16916491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 554
Target Start/End: Complemental strand, 37622880 - 37622831
Alignment:
Q  505 aataatctggtgtggcaactgccacaccatgtttcactgtagatccgccc 554  Q
    |||||||||||||||||| || |||||||||||||| ||| |||||||||    
T  37622880 aataatctggtgtggcaagtgtcacaccatgtttcaatgtggatccgccc 37622831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 9e-60; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 377 - 557
Target Start/End: Complemental strand, 38741158 - 38740983
Alignment:
Q  377 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtca 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  38741158 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctaatatgtttgcgacttatattatatatataataatttaagtca 38741059  T
Q  477 agtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    |||||||||||              ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  38741058 agtatatgaag-----aaaaaaaaggggaataatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 38740983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 50158983 - 50158835
Alignment:
Q  228 tgcatgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctataga 327  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||    
T  50158983 tgcatgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaaccatatatattaacaaagtaaaacattgataccttaaatgctataga 50158884  T
Q  328 taaatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    ||| |||||||||||||||  ||||||||||||||||||||||| ||||    
T  50158883 taagtggtttgggtgattgtgttttaccttgttgttactagttcaattc 50158835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 38741376 - 38741230
Alignment:
Q  230 catgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagata 329  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  38741376 catgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 38741277  T
Q  330 aatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    | |||||||||||||||  ||||||||| ||||||||||||| ||||    
T  38741276 agtggtttgggtgattgtgttttaccttattgttactagttcaattc 38741230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 377 - 557
Target Start/End: Original strand, 2123735 - 2123908
Alignment:
Q  377 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtca 476  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  2123735 actcagcacattcaattcgtccatcagcacataccattgagccaagaaagaaattctaatatgtttgcgacttatattatatatataataatttaagtca 2123834  T
Q  477 agtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||               ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  2123835 agtatatgaa-------aaaaaaaggggaataatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 2123908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 232 - 373
Target Start/End: Complemental strand, 33403824 - 33403683
Alignment:
Q  232 tgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaa 331  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||     
T  33403824 tgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgttaccttaaatgctatagataag 33403725  T
Q  332 tggtttgggtgattgctttttaccttgttgttactagttcga 373  Q
    |||||||||||| ||  |||||||||||||||||||||||||    
T  33403724 tggtttgggtgactgtgttttaccttgttgttactagttcga 33403683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 377 - 557
Target Start/End: Complemental strand, 50158765 - 50158589
Alignment:
Q  377 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtca 476  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  50158765 actcagcacattcaattcatccatcaacacataccattgagccaagaaagaagttctaatatgtttgcgacttatattatatatataataatttaagtca 50158666  T
Q  477 agtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    |||||||| |               || |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  50158665 agtatatgga----aaaaaaaaaaaggaaataatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 50158589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 230 - 354
Target Start/End: Original strand, 2123579 - 2123703
Alignment:
Q  230 catgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagata 329  Q
    ||||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  2123579 catgggcggatctagacatttgatattggtgtgacaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagata 2123678  T
Q  330 aatggtttgggtgattgctttttac 354  Q
    | ||||||| |||| ||| ||||||    
T  2123679 agtggtttgagtgactgcgttttac 2123703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 377 - 557
Target Start/End: Complemental strand, 33403600 - 33403424
Alignment:
Q  377 actcagcacattca--attcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagt 474  Q
    ||||||||||||||  |||||||  || |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  33403600 actcagcacattcacaattcgtcattc-gcacataccactaagccaagaaaga-gttctgatatgtttgcgacttatattatatatataataatttaagt 33403503  T
Q  475 caagtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    |||||||||||||              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33403502 caagtatatgaag----aaaaaaaaaggggaataatctggtgtggcaactgccacaccatgtttcagtgtagatccgcccctg 33403424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 11943668 - 11943778
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaat 332  Q
    |||||||||||||| ||||||||| || |||||||| |||||||  ||||| ||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  11943668 gggcggatctagacatttgatattagtgtggcaaaattttcaaacaaactatatatattaacaaagtaaaacattgacaccttaaatgctacatataaat 11943767  T
Q  333 ggtttgggtga 343  Q
    |||||||||||    
T  11943768 ggtttgggtga 11943778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 701 - 787
Target Start/End: Complemental strand, 7386809 - 7386722
Alignment:
Q  701 ggcaaaactagttcatttcattaatgatcaaagagtataaattaaagggtacatcataaaaaacat-ggggttgggattagataaaga 787  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||| | ||||||||||||||    
T  7386809 ggcaaaactaattcatttcattcatgatcaaagagtacaaattaaagtgtacatcataaaaaacatgggggctaggattagataaaga 7386722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 233 - 364
Target Start/End: Complemental strand, 37188271 - 37188140
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaat 332  Q
    ||||||||| ||||  ||||||||||| |||||||| || ||||||||||| |||||||||||||||||| | || | ||||||||  ||||||  || |    
T  37188271 gggcggatccagacaattgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaagctttaacaacttaaaaactatagcaaagt 37188172  T
Q  333 ggtttgggtgattgctttttaccttgttgtta 364  Q
    |||||||||||  || ||||||| || |||||    
T  37188171 ggtttgggtgagagcattttaccatggtgtta 37188140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 509 - 557
Target Start/End: Complemental strand, 37187959 - 37187911
Alignment:
Q  509 atctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37187959 atctggtgtggcaactgccacaccatgtttcacagtagatccgcccctg 37187911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 32942354 - 32942269
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaa 318  Q
    ||||||||| |||| |||||||||||| ||||||||  |||||| |||||| || |||||||||||||||  ||||||| ||||||    
T  32942354 gggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 32942269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 378 - 549
Target Start/End: Original strand, 5458700 - 5458871
Alignment:
Q  378 ctcagcacattcaattcgtccatc-agcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatata---ata-atttaa 472  Q
    |||| ||||| |||||| |||||| ||||||||||||  ||||||||||||| || || ||||||  ||||||||| ||||||||||   ||| || |||    
T  5458700 ctcaacacatacaattcatccatctagcacataccaccaagccaagaaagaaattgtgatatgttgacgacttatactatatatatatatatatatataa 5458799  T
Q  473 gtcaagtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatc 549  Q
    |||||||||||||||               ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  5458800 gtcaagtatatgaagaaaaaaatga-----ggaataatctggtgtggcaactgccacactatgtttcactatagatc 5458871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 502 - 554
Target Start/End: Complemental strand, 32940750 - 32940698
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgccc 554  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  32940750 gggaataatctggtgtggcaactgccacaccatgtttcatattagatccgccc 32940698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 508 - 555
Target Start/End: Original strand, 18431711 - 18431758
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcactgtagatccgcccc 555  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||    
T  18431711 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccc 18431758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 540
Target Start/End: Complemental strand, 29702498 - 29702463
Alignment:
Q  505 aataatctggtgtggcaactgccacaccatgtttca 540  Q
    |||||||||||||||||| |||||||||||||||||    
T  29702498 aataatctggtgtggcaagtgccacaccatgtttca 29702463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 5e-58; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 230 - 376
Target Start/End: Original strand, 2917617 - 2917763
Alignment:
Q  230 catgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagata 329  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  2917617 catgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgatatcttaaatgctatagata 2917716  T
Q  330 aatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    | |||||||||||| ||| |||||||||||||||||||||| |||||    
T  2917717 agtggtttgggtgactgcattttaccttgttgttactagtttgattc 2917763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 377 - 557
Target Start/End: Original strand, 2917834 - 2918007
Alignment:
Q  377 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtca 476  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2917834 actcagcacattcaattcatccatccgcacataccactgagccaagaaagaagttctgatatgtttgcgacttatattatatatataataatttaagtca 2917933  T
Q  477 agtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||               ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  2917934 agtatatgaa-------aaaaaaaagggaataatctggtgtggcaactgccacaccatgtttcagtgtgaatccgcccctg 2918007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 365
Target Start/End: Complemental strand, 15545122 - 15544990
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaat 332  Q
    ||||||||| ||||  ||||||||||| |||||||| || ||||||||||| |||||||||||||||||| | || | ||||||||  ||||||  || |    
T  15545122 gggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaagctttaaaaacttaaaaactatagcaaagt 15545023  T
Q  333 ggtttgggtgattgctttttaccttgttgttac 365  Q
    ||||||| |||  || ||||||| || ||||||    
T  15545022 ggtttggatgagagcattttaccatggtgttac 15544990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 47286607 - 47286692
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaa 318  Q
    ||||||||| |||| |||||||||||| ||||||||  |||||| |||||| || |||||||||||||||  ||||||| ||||||    
T  47286607 gggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 47286692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 505 - 558
Target Start/End: Original strand, 51513128 - 51513181
Alignment:
Q  505 aataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctgt 558  Q
    |||||||| |||||||||||||||||||||||||||| || |||||||||||||    
T  51513128 aataatctagtgtggcaactgccacaccatgtttcacagtggatccgcccctgt 51513181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 4940130 - 4940047
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataactta 316  Q
    |||||||||||||   ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||| | |||| ||||||    
T  4940130 gggcggatctagagagttgatattggtgtggcaaaatttgcaaaggaactatatatattaacaaagtaaagctttgacaactta 4940047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 28323128 - 28323073
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||||||||||||| |||||||||||||||||  ||  |||||||||||    
T  28323128 gggaataatctggtgtggcaagtgccacaccatgtttcaaggtgaatccgcccctg 28323073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 18764667 - 18764733
Alignment:
Q  252 atattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaa 318  Q
    |||||| |||| ||||||| | |||| ||||| ||||||||||||||||||  ||||||| ||||||    
T  18764667 atattgatctgacaaaactgttaaagtaactatatatattaacaaagtaaagtattgataccttaaa 18764733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 558
Target Start/End: Complemental strand, 15544899 - 15544866
Alignment:
Q  525 gccacaccatgtttcactgtagatccgcccctgt 558  Q
    ||||||||||||||||| ||||||||||||||||    
T  15544899 gccacaccatgtttcacagtagatccgcccctgt 15544866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 377 - 557
Target Start/End: Original strand, 46913338 - 46913513
Alignment:
Q  377 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtca 476  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  46913338 actcagcacattcaattcgtccatcagcacataccactaagccaagaaagaagttctaatatgtttgcgacttatattatatatataataatttaagtca 46913437  T
Q  477 agtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    |||||||||||              ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  46913438 agtatatgaag-----ataaaaaaggggaataatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 46913513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 232 - 376
Target Start/End: Original strand, 46912926 - 46913070
Alignment:
Q  232 tgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaa 331  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||     
T  46912926 tgggcggatctagacatttgatattggtgtggcaaaactttcaaagcaactatatatattaacaaagtaaaacattgataccttaaatgctatagataag 46913025  T
Q  332 tggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    |||||||||||| ||  ||||||||| ||||||||||||| ||||    
T  46913026 tggtttgggtgactgtgttttaccttattgttactagttcaattc 46913070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 36616868 - 36616978
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaat 332  Q
    |||||||||||||| |||||||||||| ||| |||| |||||||  ||||| |||||||||||||||||||||||  || ||||||||||| ||||||||    
T  36616868 gggcggatctagacatttgatattggtgtggtaaaattttcaaacaaactatatatattaacaaagtaaaacattcttaccttaaatgctacagataaat 36616967  T
Q  333 ggtttgggtga 343  Q
    |||||||||||    
T  36616968 ggtttgggtga 36616978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 46357783 - 46357861
Alignment:
Q  231 atgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattga 309  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||||| | ||||||    
T  46357783 atgggcggatctagacatttgatattggtgtggcaaaactttcaaagaaactatatatattaacaaagtagaccattga 46357861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 28998364 - 28998237
Alignment:
Q  249 ttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaatggtttgggtgattgct 348  Q
    ||||||||||| |||||||| || ||||||||||| |||||||||||||||||| | || | ||||||||  ||||||  || ||||||||||||  ||     
T  28998364 ttgatattggtatggcaaaatttgcaaagcaactatatatattaacaaagtaaagctttaacaacttaaaaactatagcaaagtggtttgggtgagagca 28998265  T
Q  349 ttttaccttgttgttactagttcgattc 376  Q
    ||||||| || ||||||  |||||||||    
T  28998264 ttttaccatggtgttacaggttcgattc 28998237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 509 - 557
Target Start/End: Complemental strand, 28998068 - 28998020
Alignment:
Q  509 atctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28998068 atctggtgtggcaactgccacaccatgtttcacagtagatccgcccctg 28998020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 4519805 - 4519742
Alignment:
Q  237 ggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagta 300  Q
    |||||||||| |||||||||||| || |||||||| ||||||||||| ||||||||||||||||    
T  4519805 ggatctagacatttgatattggtgtgacaaaacttgcaaagcaactatatatattaacaaagta 4519742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 42896852 - 42896919
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagta 300  Q
    |||||||||||||| |||||||||||| |||||||||||| |||  ||||| ||||||||||||||||    
T  42896852 gggcggatctagacatttgatattggtgtggcaaaacttttaaaaaaactatatatattaacaaagta 42896919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 46457683 - 46457826
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaat 332  Q
    ||||||||| ||||  ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||| | || | ||||||||  ||||||  || |    
T  46457683 gggcggatccagacagttgatattggtgtggcaaaatttgcaaagtaactatatatattaacaaagtaaagctttaacaacttaaaaactatagcaaagt 46457782  T
Q  333 ggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    |||||||||||  || ||||||| || |||| |  |||||||||    
T  46457783 ggtttgggtgagagcattttaccatggtgttgcaggttcgattc 46457826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 378 - 486
Target Start/End: Complemental strand, 18103555 - 18103446
Alignment:
Q  378 ctcagcacattcaattcgtccatca-gcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtca 476  Q
    |||| ||||| |||||| || |||| |||||||||| |||| |||||||||| || || |||||| ||  |||||| || ||||||||| ||||||||||    
T  18103555 ctcaacacatacaattcatctatcaagcacataccattgagtcaagaaagaaattgtgatatgttggcagcttatactacatatataattatttaagtca 18103456  T
Q  477 agtatatgaa 486  Q
    ||||||||||    
T  18103455 agtatatgaa 18103446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 33081938 - 33081854
Alignment:
Q  234 ggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaa 318  Q
    |||||||| |||| |||||||||||| ||||||||  |||||| |||||| || |||||||||||||||  ||||||| ||||||    
T  33081938 ggcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 33081854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 328
Target Start/End: Complemental strand, 18104576 - 18104488
Alignment:
Q  240 tctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagat 328  Q
    ||||||| |||||||||||| || ||||| ||| |||  ||||| ||||||||| ||||||| |||||||||  |||||||||| ||||    
T  18104576 tctagacatttgatattggtgtgacaaaattttgaaacaaactatatatattaataaagtaacacattgatacattaaatgctacagat 18104488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 540
Target Start/End: Complemental strand, 41969832 - 41969794
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatgtttca 540  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  41969832 gggaataatctggtgtggcaagtgccacaccatgtttca 41969794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 557
Target Start/End: Original strand, 46457998 - 46458043
Alignment:
Q  512 tggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||    
T  46457998 tggtgtggcaactgccacaccatgtttcatagtagctccgcccctg 46458043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 23041601 - 23041744
Alignment:
Q  235 gcggatctagacttttgatattggtctggcaaaactttcaaagcaac--tacatatattaacaaagtaaaacattgataacttaaatgctatagataaat 332  Q
    ||||||| ||||  ||||||||||| |||||||| ||  ||||||||  || |||||||||||||||||| | || | ||| ||||  ||||||  || |    
T  23041601 gcggatccagacagttgatattggtgtggcaaaatttgaaaagcaactatatatatattaacaaagtaaagctttaacaacataaaaactatagcaaagt 23041700  T
Q  333 ggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    |||||||||||  || ||||||| || ||||||  |||||||||    
T  23041701 ggtttgggtgagagcattttaccatggtgttacaggttcgattc 23041744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 31670668 - 31670593
Alignment:
Q  243 agacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaa 318  Q
    |||| |||||||||||| ||  |||| || |||| |||||| ||||||||||||||||||| ||||| | ||||||    
T  31670668 agacatttgatattggtgtgataaaatttccaaaacaactatatatattaacaaagtaaaatattgacaccttaaa 31670593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 540
Target Start/End: Original strand, 42897753 - 42897788
Alignment:
Q  505 aataatctggtgtggcaactgccacaccatgtttca 540  Q
    ||||||||||| ||||||||||||||||||||||||    
T  42897753 aataatctggtatggcaactgccacaccatgtttca 42897788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 519 - 557
Target Start/End: Original strand, 36617052 - 36617090
Alignment:
Q  519 gcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  36617052 gcaactgccacaccatatttcactgtggatccgcccctg 36617090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 343
Target Start/End: Original strand, 43998135 - 43998229
Alignment:
Q  249 ttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaatggtttgggtga 343  Q
    ||||||||||| || ||||| || ||||| ||||| |||||||||||||||| ||| || | ||||||||  |||||   || ||||||||||||    
T  43998135 ttgatattggtgtgacaaaatttgcaaagtaactatatatattaacaaagtacaactttaacaacttaaaaactataacaaagtggtttgggtga 43998229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 487
Target Start/End: Complemental strand, 4519389 - 4519344
Alignment:
Q  443 gcgacttatattat-atatataataatttaagtcaagtatatgaag 487  Q
    |||||||||||||| ||||||||| ||||||||||| |||||||||    
T  4519389 gcgacttatattattatatataattatttaagtcaaatatatgaag 4519344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 487
Target Start/End: Complemental strand, 7799569 - 7799536
Alignment:
Q  454 tatatatataataatttaagtcaagtatatgaag 487  Q
    |||||||||||| |||||||||||||||||||||    
T  7799569 tatatatataattatttaagtcaagtatatgaag 7799536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 535
Target Start/End: Complemental strand, 19815163 - 19815130
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatg 535  Q
    ||||||||||||||||||||| ||||||||||||    
T  19815163 gggaataatctggtgtggcaagtgccacaccatg 19815130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 541
Target Start/End: Complemental strand, 38663052 - 38663019
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcac 541  Q
    |||||||||||||| |||||||||||||||||||    
T  38663052 aatctggtgtggcagctgccacaccatgtttcac 38663019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 713 - 770
Target Start/End: Complemental strand, 42562152 - 42562095
Alignment:
Q  713 tcatttcattaatgatcaaagagtataaattaaagggtacatcataaaaaacatgggg 770  Q
    |||||| |||||| ||||||||||| || | | |||||||||||||||||| ||||||    
T  42562152 tcattttattaataatcaaagagtacaagtaagagggtacatcataaaaaatatgggg 42562095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 486
Target Start/End: Original strand, 42897695 - 42897736
Alignment:
Q  446 acttatattatatatataataatttaagtc-aagtatatgaa 486  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  42897695 acttatattatatatataattatttaagtctaagtatatgaa 42897736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 551
Target Start/End: Complemental strand, 46437357 - 46437312
Alignment:
Q  506 ataatctggtgtggcaactgccacaccatgtttcactgtagatccg 551  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||    
T  46437357 ataatcttgtgtggcagctgccacaccatgtttcactctacatccg 46437312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 8e-54; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 229 - 376
Target Start/End: Original strand, 29246831 - 29246978
Alignment:
Q  229 gcatgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagat 328  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  29246831 gcatgggcggatctagacatttgatattgatgtggcaaaactttcaaagcaactatatatattaacaaagtataacattgataccttaaatgctatagat 29246930  T
Q  329 aaatggtttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    || |||||||||||||||  |||||||||||||||||||||| |||||    
T  29246931 aagtggtttgggtgattgtgttttaccttgttgttactagtttgattc 29246978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 377 - 557
Target Start/End: Original strand, 29247049 - 29247226
Alignment:
Q  377 actcagcacattcaattcgtccatcagcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtca 476  Q
    ||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||    
T  29247049 actcagcacattcaattcgtccatccgcacataccaccgatctaagaaagaagttctgatatgtttgtgacttatattatctatataataatttaagtca 29247148  T
Q  477 agtatatgaagnnnnnnnnnnnnnngggaataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    ||||||||||               ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  29247149 agtatatgaa---aaaaaaaaaaaggggaataatctggtgtggcaactgccacaccatgtttcagtgtggatccgcccctg 29247226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 243 - 343
Target Start/End: Complemental strand, 35702195 - 35702095
Alignment:
Q  243 agacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaatggtttgggtg 342  Q
    |||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||||||  ||| ||  ||||| ||||||||    
T  35702195 agacatttgatattggtgtggcaaaactttcaaagaaactatatatattaacaaagtaaaacattgacaccttaaacactacagcaaaatgatttgggtg 35702096  T
Q  343 a 343  Q
    |    
T  35702095 a 35702095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 14443119 - 14442979
Alignment:
Q  236 cggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaatggt 335  Q
    |||||| ||||  ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||| |||| | ||||||||  ||||||  || ||||    
T  14443119 cggatccagacagttgatattggtgtggcaaaatttgcaaagtaactatatatattaacaaagtaaagcattaacaacttaaaaactatagcaaagtggt 14443020  T
Q  336 ttgggtgattgctttttaccttgttgttactagttcgattc 376  Q
    ||||||||  || ||||||| || ||||||  |||||||||    
T  14443019 ttgggtgagagcattttaccatggtgttacaggttcgattc 14442979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 509 - 558
Target Start/End: Original strand, 33619647 - 33619696
Alignment:
Q  509 atctggtgtggcaactgccacaccatgtttcactgtagatccgcccctgt 558  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  33619647 atctgatgtggcaactgccacaccatgtttcacagtagatccgcctctgt 33619696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 7351391 - 7351474
Alignment:
Q  228 tgcatgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgata 311  Q
    |||| ||||||||| |||| |||||||||||| ||||||||  || ||| |||||| || |||||||||||||||  |||||||    
T  7351391 tgcaggggcggatccagacatttgatattggtgtggcaaaatatttaaatcaactatatttattaacaaagtaaataattgata 7351474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 16431408 - 16431487
Alignment:
Q  402 agcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatatataataatttaagtcaagtat 481  Q
    |||||||||||||   |||||||||||  | || ||| ||  ||| |||||||||||||||||| |||||||||||||||    
T  16431408 agcacataccactagaccaagaaagaaactgtgatattttgacgatttatattatatatataattatttaagtcaagtat 16431487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 11920631 - 11920700
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaa 302  Q
    |||||||||||||   ||||||||||| |||| ||| || ||||| ||||| |||||||||||| |||||    
T  11920631 gggcggatctagagagttgatattggtgtggcgaaatttgcaaagaaactatatatattaacaacgtaaa 11920700  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 554
Target Start/End: Complemental strand, 14442810 - 14442765
Alignment:
Q  509 atctggtgtggcaactgccacaccatgtttcactgtagatccgccc 554  Q
    ||||||||||||||| ||||||||||||||||  |||| |||||||    
T  14442810 atctggtgtggcaacagccacaccatgtttcatagtagctccgccc 14442765  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Complemental strand, 28535242 - 28535193
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctg 557  Q
    |||||||||||||| |||||||||||||||||||  |  |||||||||||    
T  28535242 aatctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 28535193  T

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Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 224 - 340
Target Start/End: Complemental strand, 595817 - 595701
Alignment:
Q  224 tgtgtgcatgggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgcta 323  Q
    ||||| || ||| |||||||||| ||||||||| || |||||||| |||||||  ||||| ||||||||||||||||||||||||||| |||||||||||    
T  595817 tgtgttcaggggtggatctagacatttgatattagtgtggcaaaattttcaaacaaactatatatattaacaaagtaaaacattgatatcttaaatgcta 595718  T
Q  324 tagataaatggtttggg 340  Q
     ||||||||||||||||    
T  595717 cagataaatggtttggg 595701  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 502 - 550
Target Start/End: Complemental strand, 595582 - 595534
Alignment:
Q  502 gggaataatctggtgtggcaactgccacaccatgtttcactgtagatcc 550  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  595582 gggaataatctggtgtggcaactgccacaccatgtttcactgtggatcc 595534  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 365
Target Start/End: Original strand, 6174377 - 6174509
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaatgctatagataaat 332  Q
    ||||||||| ||||  ||||||||||| |||||||| || ||||||||||| |||||||||||||||||| |  | | ||||||||  ||||||  || |    
T  6174377 gggcggatccagacagttgatattggtgtggcaaaatttgcaaagcaactatatatattaacaaagtaaagctataacaacttaaaaactatagcaaagt 6174476  T
Q  333 ggtttgggtgattgctttttaccttgttgttac 365  Q
    |||||||||||  || ||||||| || ||||||    
T  6174477 ggtttgggtgagagcattttaccatggtgttac 6174509  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 378 - 461
Target Start/End: Complemental strand, 595687 - 595603
Alignment:
Q  378 ctcagcacattcaattcgtccatc-agcacataccactgagccaagaaagaagttctggtatgtttgcgacttatattatatata 461  Q
    |||||| ||| |||||| |||||| ||||||||||||||||||||||||||| || || ||||||  ||||||||| ||||||||    
T  595687 ctcagcccatacaattcatccatctagcacataccactgagccaagaaagaaattgtgatatgttgacgacttatactatatata 595603  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 505 - 556
Target Start/End: Complemental strand, 841995 - 841944
Alignment:
Q  505 aataatctggtgtggcaactgccacaccatgtttcactgtagatccgcccct 556  Q
    ||||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  841995 aataatctggtgttgcaactgccacaccatgtttcacggtggatccgcccct 841944  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 13850814 - 13850731
Alignment:
Q  235 gcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattgataacttaaa 318  Q
    ||||||| |||| |||||||||||| ||||||||  |||||| |||||| || |||||||||||||||  ||||||| ||||||    
T  13850814 gcggatccagacatttgatattggtgtggcaaaatattcaaatcaactatatttattaacaaagtaaataattgataccttaaa 13850731  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 843724 - 843648
Alignment:
Q  233 gggcggatctagacttttgatattggtctggcaaaactttcaaagcaactacatatattaacaaagtaaaacattga 309  Q
    ||||||||||| || |||||||||||| || ||||||||| ||| |||||| ||||||||| |||||| | ||||||    
T  843724 gggcggatctaaacatttgatattggtgtgacaaaacttttaaaacaactatatatattaataaagtagaccattga 843648  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 508 - 559
Target Start/End: Original strand, 5014169 - 5014220
Alignment:
Q  508 aatctggtgtggcaactgccacaccatgtttcactgtagatccgcccctgtt 559  Q
    |||||||||||||| |||||||||||||||||||| || |||||||| ||||    
T  5014169 aatctggtgtggcagctgccacaccatgtttcactctacatccgcccttgtt 5014220  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 487
Target Start/End: Complemental strand, 842041 - 842008
Alignment:
Q  454 tatatatataataatttaagtcaagtatatgaag 487  Q
    |||||||||||| |||||||||||||||||||||    
T  842041 tatatatataattatttaagtcaagtatatgaag 842008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 511 - 540
Target Start/End: Complemental strand, 13850538 - 13850509
Alignment:
Q  511 ctggtgtggcaactgccacaccatgtttca 540  Q
    ||||||||||||||||||||||||||||||    
T  13850538 ctggtgtggcaactgccacaccatgtttca 13850509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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