View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_high_22 (Length: 433)
Name: NF20764_high_22
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 39521725 - 39522146
Alignment:
| Q |
1 |
agttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521725 |
agttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgttgcttggaacggttttgaattcataggaagaattggaaaggaaaattcttgct |
39521824 |
T |
|
| Q |
101 |
gtttggttgagaggtgaagacactggtgattgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521825 |
gtttggttgagaggtgaagacactggtgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatat |
39521924 |
T |
|
| Q |
201 |
aatggttgttattttcatccacgtcgacatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaa |
300 |
Q |
| |
|
|| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521925 |
aaaggttgttattttcattcacgtcgatatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaa |
39522024 |
T |
|
| Q |
301 |
ttgaagnnnnnnngcaagtagaaagatagagcgttgaattgtgtggaagtgaaaggttgacatagtgagagaggaaaattgtgtttgtttgatgannnnn |
400 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39522025 |
ttgaagaaaaaaagcaaggagaaagatagagcgttgaattgtgtggaagtgaaaggttgacatggtgagagaggaaaattgtgtttgtttgatgattttt |
39522124 |
T |
|
| Q |
401 |
nnnaagttatgaaattgatgat |
422 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39522125 |
tttaagttatgaaattgatgat |
39522146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 39544518 - 39544820
Alignment:
| Q |
1 |
agttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| | ||| |||||||||||||| | |||| |||| || |||||| |
|
|
| T |
39544518 |
agttggtgaagagaatgaaaagaaatggaaacataccatgtaggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgct |
39544617 |
T |
|
| Q |
101 |
gtttggttgagaggtgaagacactggtgattgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatat |
200 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||| |||||| |||| ||||| | |||| ||||||| | |||||||||||||||||| |
|
|
| T |
39544618 |
gtttggtagagaggtgaaaacactggtgattgacttgttactttggag---ctttttctgaaacttgtttttgggtaagtagggtttgattcaccaatat |
39544714 |
T |
|
| Q |
201 |
aatggttgttattttcatccacgtcgacatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaa |
300 |
Q |
| |
|
|| ||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
39544715 |
aaaggttgttattttcattcacgtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaa |
39544814 |
T |
|
| Q |
301 |
ttgaag |
306 |
Q |
| |
|
|||||| |
|
|
| T |
39544815 |
ttgaag |
39544820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 39576370 - 39576675
Alignment:
| Q |
1 |
agttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |||||||||||||| | ||| ||||| ||||| || | ||| |||||||||||||| |
|
|
| T |
39576370 |
agttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtatggtagaaaattcgtaggaggattcagaatggaaaattcttgct |
39576469 |
T |
|
| Q |
101 |
gtttggttgagaggtgaagacactggtgattgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatat |
200 |
Q |
| |
|
||||||| |||||||||||||||| |||| || | ||| | |||| | |||| ||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39576470 |
gtttggtaaagaggtgaagacactgatgatggattggtttctatggaacttctttggctgaatgattttttagggtaagcatggtttgattcaccaatat |
39576569 |
T |
|
| Q |
201 |
aatggttgttattttcatccacgtcgacatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaa |
300 |
Q |
| |
|
|| | || |||||||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
39576570 |
aaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatcgtatccgagtgcagggaagtgtagtgatgagaa |
39576669 |
T |
|
| Q |
301 |
ttgaag |
306 |
Q |
| |
|
|||||| |
|
|
| T |
39576670 |
ttgaag |
39576675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 39580899 - 39581216
Alignment:
| Q |
1 |
agttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgct |
100 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||| |||| || ||||| |
|
|
| T |
39580899 |
agttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgct |
39580998 |
T |
|
| Q |
101 |
gtttggttgagaggtgaa---------gaca---ctggtgattgacttgttacgttggagttactttcgctgaataattttttcgggtaagcatggtttg |
188 |
Q |
| |
|
||||||| |||||||||| || | || ||||||||||||||| |||||| |||| |||||| | | ||||||| |||| | |||||| |
|
|
| T |
39580999 |
gtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgttactttggag---cttttgctgaaaactgttttcggataagtagggtttg |
39581095 |
T |
|
| Q |
189 |
attcaccaatataatggttgttattttcatccacgtcgacatctgatccacaattgatgaagtatgtgtcttgaggatcgt---atccgagtgaggggaa |
285 |
Q |
| |
|
|||||||||||||| ||||||| ||||| || || | ||||||||| ||||||||||||||||||| ||| |||| | ||||||| |||| || |
|
|
| T |
39581096 |
attcaccaatataaacgttgttactttcagtaacatcaaaatctgatccgcaattgatgaagtatgtgtgttggggattatataatccgagcgaggaaaa |
39581195 |
T |
|
| Q |
286 |
ttgtaatgatgagaattgaag |
306 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39581196 |
ttgtaatgatgagaattgaag |
39581216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 39525225 - 39525356
Alignment:
| Q |
4 |
tggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtt |
103 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| || || |||| | |||| | || || ||||||||| |
|
|
| T |
39525225 |
tggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgtataaagattcggaatgaaatatccttgctgtt |
39525324 |
T |
|
| Q |
104 |
tggttgagaggtgaagacactggtgattgact |
135 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||| |
|
|
| T |
39525325 |
tggtagagaggtgaaggcactgatgattgact |
39525356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 39511479 - 39511617
Alignment:
| Q |
1 |
agttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttggaacggttttgaattcataggaagaattggaaaggaaaattcttgct |
100 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||| || ||||||||||| | |||||||||||| || |||| | |||| ||||||| ||||| |
|
|
| T |
39511479 |
agttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaagattcggaacggaaaatccttgca |
39511578 |
T |
|
| Q |
101 |
gtttggttgagaggtgaagacactggtgattgacttgtt |
139 |
Q |
| |
|
||||||| ||||| ||||| |||| ||||||| ||||| |
|
|
| T |
39511579 |
gtttggtagagagatgaaggaactgatgattgatttgtt |
39511617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 39525453 - 39525529
Alignment:
| Q |
229 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaa |
305 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
39525453 |
atctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatgagaattgaa |
39525529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 39581850 - 39581927
Alignment:
| Q |
229 |
atctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaag |
306 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| ||||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
39581850 |
atcttatccacaactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaag |
39581927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 3331560 - 3331509
Alignment:
| Q |
3 |
ttggtgaagagaatgaaaagaaatgaaaacgtaccatgtaagtgttgtttgg |
54 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
3331560 |
ttggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University