View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_high_23 (Length: 428)
Name: NF20764_high_23
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 45757788 - 45758096
Alignment:
| Q |
18 |
gtactatatggacaacaaaataannnnnnnaaatataaattgatcaaaataattaatgctgcaaaacttttacaccatgatggcagctacggtacacaat |
117 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45757788 |
gtactatatggacaataaaataatttattttaatataaattgatcaaaataattaatgacgcaaaacttttacaccatgatggcagctacggtacacaat |
45757887 |
T |
|
| Q |
118 |
ggttgattaccgccttcacgttgctgttccggcaccacactgcaaccactatccagcctcaaggtgggacacttgacaatgttgtcggttaggtcgttgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45757888 |
ggttgattaccgccttcacgttgctgttccggcaccacactgcaaccactatccagcctcaaggtgggacacttgacaatgttgtcggttaggtcgttgg |
45757987 |
T |
|
| Q |
218 |
tcgaccaaaacatgacggaagagtgagttttgtagatatcatctcaaataagagaagagcaccgaagtattatgatattagagcaatgaacaagtagaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45757988 |
tcgaccaaaacatgacggaagagtgagttttgtagatatcatctcaaataagagaagagcaccgaagtattatgata-tagagcaatgaacaagtagaat |
45758086 |
T |
|
| Q |
318 |
atatgagaat |
327 |
Q |
| |
|
|||||||||| |
|
|
| T |
45758087 |
atatgagaat |
45758096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 45758094 - 45758177
Alignment:
| Q |
348 |
aattaaccatttttgtatcggtaaacaaaaaataatttgtgtac---tctatacgtcacctcacatgaaatagaggcaattgat |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45758094 |
aattaaccatttttgtatcggtaaacaaaaaataatttgtgtactaatctatacgtcacctcacatgaaatagaggcaattgat |
45758177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University