View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_high_28 (Length: 407)
Name: NF20764_high_28
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 129 - 371
Target Start/End: Original strand, 4463586 - 4463828
Alignment:
| Q |
129 |
aactttgtgaggtcaagagtctggcacatccacgtgcttattgaacaataatctcatgaagtatatacaaatcgactcctatggccgaaattcttctcat |
228 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4463586 |
aactttgtgagatcaagagtctggcacatccacgtgcttattgaacaataatctcatgaagtatatacaaatctactcctatggccgaaattcttctcat |
4463685 |
T |
|
| Q |
229 |
attaattaatggaaggaccatgtatcatatttaatcaaatattataatatcatccataaatggcactcctccatgttaggttctgcttgtaaaaggaatt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4463686 |
attaattaatggaaggaccatgtatcatatttaatcaaatattataatatcatccataaatggcactcctccatgttaggttctgcttgtaaaaggaatt |
4463785 |
T |
|
| Q |
329 |
tggattagtggacgtaaatctgtgccaaaggtgctgattttat |
371 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
4463786 |
tggattagtggacgtaactgcgtgccaaaggtgctgattttat |
4463828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 4463133 - 4463195
Alignment:
| Q |
50 |
attgacatgcatttaataccctccaattgttgcgtaactataaggaatgggcatcccagttgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4463133 |
attgacatgcatttaataccctccaaatgttgcgtaactataaggaatgggcatcctagttgt |
4463195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 4463947 - 4464011
Alignment:
| Q |
307 |
ggttctgcttgtaaaaggaatttggattagtggacgtaaatctgtgccaaaggtgctgattttat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
4463947 |
ggttctgcttgtaaaaggaatttggattagtggacgtaactgcgtgccaaaggtgctgattttat |
4464011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 4464130 - 4464194
Alignment:
| Q |
307 |
ggttctgcttgtaaaaggaatttggattagtggacgtaaatctgtgccaaaggtgctgattttat |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
4464130 |
ggttctgcttgtaaaaggaatttggattagtggacgtaactgcgtgccaaaggtgctgattttat |
4464194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University