View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_high_3 (Length: 695)

Name: NF20764_high_3
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_high_3
NF20764_high_3
[»] chr4 (4 HSPs)
chr4 (18-685)||(105999-106663)
chr4 (347-503)||(166715-166871)
chr4 (347-418)||(131919-131991)
chr4 (630-674)||(166547-166591)
[»] chr7 (3 HSPs)
chr7 (606-685)||(13054476-13054555)
chr7 (366-451)||(13055035-13055120)
chr7 (453-543)||(13054763-13054856)
[»] chr3 (2 HSPs)
chr3 (348-436)||(12135305-12135393)
chr3 (453-552)||(12135541-12135640)
[»] scaffold0013 (3 HSPs)
scaffold0013 (366-443)||(90221-90298)
scaffold0013 (453-549)||(90399-90498)
scaffold0013 (622-671)||(90709-90758)
[»] chr8 (11 HSPs)
chr8 (453-538)||(5652560-5652645)
chr8 (453-543)||(5687139-5687229)
chr8 (366-449)||(5652169-5652252)
chr8 (453-546)||(5666132-5666226)
chr8 (359-449)||(5686918-5687008)
chr8 (630-680)||(5666314-5666364)
chr8 (630-680)||(5687384-5687434)
chr8 (453-543)||(5719256-5719346)
chr8 (630-680)||(5719500-5719550)
chr8 (366-444)||(5601508-5601586)
chr8 (366-444)||(5639034-5639112)


Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 18 - 685
Target Start/End: Complemental strand, 106663 - 105999
Alignment:
Q  18 atatgtaacaagaaactagatgctagatagtaaagaactaacaagaagtagaattaacattgcaaagttacaattaatgaatgagtaactgcactaagca 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||| ||||||||| |||    
T  106663 atatgttacaagaaactagatgctagatagtaaagaactaacaagaagtagaattaaaattgcaaagttacaat----gaatgagtgactgcactaggca 106568  T
Q  118 tgataagataactcctatcagaaccagtaaaaagaataaattcaataaaggatgactaaaaccaagaaa-caatcattggacattaaatatatgccaaac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  106567 tgataagataactcctatcagaaccagtaaaaagaataaattcaataaaggatgactaaaaccaagaaaacaatcattggacattaaatatatgccaaac 106468  T
Q  217 cattaaaaataaatttgatcaaatgctgtatcagtagacattatttataaaaagataatgtgttctgtgattatataatgctaatgactcctgtctagtt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  106467 cattaaaaataaatttgatcaaatgctgtatcagtagacattatttataaaaagataatgtgttctgtgattatataatgctaatgacacctgtctagtt 106368  T
Q  317 ttttaagaccacattcattactaaattagtatatcaaaggattgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106367 ttttaagaccacattcattactaaattagtatatcaaaggattgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattt 106268  T
Q  417 tgcagcacgatggagaggagtagggtctctctctgtctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttcct 516  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  106267 tgcagcacgatggagaggagtagggtctctctctgcctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatcggcttcct 106168  T
Q  517 tcgagaggtacatatatctgcaatattattatttagcaagacattattattgtcaattcattttgaagtcagcgaatgattggtaactaattagtaataa 616  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  106167 tcgagaggtacatatatctgcattattattatttagcaagacattattattgtcaattcatgttgaagtcagcgaatgattggtaactaattagtaataa 106068  T
Q  617 atactcaattatgaaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtg 685  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106067 atactcaattatgaaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtg 105999  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 347 - 503
Target Start/End: Complemental strand, 166871 - 166715
Alignment:
Q  347 atatcaaaggattgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtctct 446  Q
    ||||||||| | | |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  166871 atatcaaagaacttagatgaacctgttggggccaattgccttcttccaactgggaattgatgagcaattttgcagcacgatgaagaggagtagggtctct 166772  T
Q  447 ctctgtctggccggcatgaattaaacccataagagcccatgcagtatgtacaacatt 503  Q
    ||||| ||| ||  ||||||||||| ||||||||||||||||||| |||||||||||    
T  166771 ctctgcctgaccaccatgaattaaagccataagagcccatgcagtttgtacaacatt 166715  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 131991 - 131919
Alignment:
Q  347 atatcaaaggattgagataaacctgttggggccaatcgccttcttccaact-gggaattgatgagcaattttg 418  Q
    |||||||||||||||| | ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  131991 atatcaaaggattgagttgaaccttttgggaccaatcgccttcttccaactggggaattgatgagcaattttg 131919  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 630 - 674
Target Start/End: Complemental strand, 166591 - 166547
Alignment:
Q  630 aaccttttttgggcttgaaagatagctctccccccacccaccatc 674  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  166591 aaccttttttgggcatgaaagatagctctccccccacccaccatc 166547  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 606 - 685
Target Start/End: Complemental strand, 13054555 - 13054476
Alignment:
Q  606 attagtaataaatactcaattatgaaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtg 685  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  13054555 attagtaataattactcaattatgaaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtg 13054476  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 13055120 - 13055035
Alignment:
Q  366 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtctctctctg 451  Q
    |||||||||||||||||| || |||| |||||||||||||||||| |||||||||| |||||| ||||||||| ||||||| ||||    
T  13055120 aacctgttggggccaatcaccctctttcaactgggaattgatgagaaattttgcagaacgatgaagaggagtaaggtctctttctg 13055035  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 543
Target Start/End: Complemental strand, 13054856 - 13054763
Alignment:
Q  453 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggat--ct-gcttccttcgagaggtacatatatctgcaatatt 543  Q
    |||||| |||| |||||||| ||| ||| |||||||||| ||||||||||| |||  || ||||||||| ||||||| |||| |||||| ||||    
T  13054856 ctggccagcataaattaaactcatgagaccccatgcagtttgtacaacatttgattgctggcttccttcaagaggtatatatttctgcattatt 13054763  T

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Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 436
Target Start/End: Original strand, 12135305 - 12135393
Alignment:
Q  348 tatcaaaggattgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggag 436  Q
    ||||||| ||||||||| ||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||| || |||||||    
T  12135305 tatcaaatgattgagatgaacctgttgtggccaatcaccctcttccaactgagaattgatgagcaattttgcagcacggtgaagaggag 12135393  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 453 - 552
Target Start/End: Original strand, 12135541 - 12135640
Alignment:
Q  453 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatattattatttag 552  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||| ||| ||||| |||||||| |||||||  |||||||||| ||||| |||||||    
T  12135541 ctggccagcatgaattaaacccagaagagcccatgcagtctgtacaagatttgatctacttccttcaagaggtatgtatatctgcattattaatatttag 12135640  T

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Target: scaffold0013 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 90221 - 90298
Alignment:
Q  366 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtc 443  Q
    |||||||||||||||||| |||| || |||||| ||||| || |||||||||||||||||||||||||||||||||||    
T  90221 aacctgttggggccaatctccttgtttcaactgagaatttataagcaattttgcagcacgatggagaggagtagggtc 90298  T

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Target: scaffold0013; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 453 - 549
Target Start/End: Original strand, 90399 - 90498
Alignment:
Q  453 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattgga-tc--tgcttccttcgagaggtacatatatctgcaatattattatt 549  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||   ||||||||| ||||||||||||| ||||| ||||||||||    
T  90399 ctggccagcatgaattaaacccataagagcccatgcagtttgtacaacatttgactcctggcttccttcaagaggtacatatacctgcattattattatt 90498  T

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Target: scaffold0013; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 671
Target Start/End: Original strand, 90709 - 90758
Alignment:
Q  622 caattatgaaccttttttgggcttgaaagatagctctccccccacccacc 671  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  90709 caattatgaacctttttagggcatgaaagatagctctctccccaaccacc 90758  T

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Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 453 - 538
Target Start/End: Original strand, 5652560 - 5652645
Alignment:
Q  453 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgca 538  Q
    |||||| |||||||||||||||||||||||||||||||| || |||| ||| ||||  | ||||||||||||||||||| ||||||    
T  5652560 ctggccagcatgaattaaacccataagagcccatgcagtttgaacaatatttgatcgacctccttcgagaggtacatatgtctgca 5652645  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 453 - 543
Target Start/End: Original strand, 5687139 - 5687229
Alignment:
Q  453 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatatt 543  Q
    ||||||||||||||| ||| |||| ||||||||||| || ||||||| ||| |||  ||||||||| ||||||||||||||||||| ||||    
T  5687139 ctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcattatt 5687229  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 366 - 449
Target Start/End: Original strand, 5652169 - 5652252
Alignment:
Q  366 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtctctctc 449  Q
    ||||||||||||||| || || ||||| || |||||||||||||  ||||||||||||||||| |||| ||| |||||| ||||    
T  5652169 aacctgttggggccagtcaccctcttctaattgggaattgatgattaattttgcagcacgatgaagagtagttgggtctatctc 5652252  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 453 - 546
Target Start/End: Original strand, 5666132 - 5666226
Alignment:
Q  453 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgca-atattatt 546  Q
    ||||||||||||||| ||| |||| ||||||||||  || ||||||| ||| |||  ||||||||| |||||| |||||||||||| ||||||||    
T  5666132 ctggccggcatgaatcaaagccattagagcccatgatgtctgtacaatatttgattggcttccttcaagaggtgcatatatctgcatatattatt 5666226  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 449
Target Start/End: Original strand, 5686918 - 5687008
Alignment:
Q  359 tgagataaacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtctctctc 449  Q
    ||||||||||||||||||||||||| || || ||    |||  ||||||||  |||||| |||||||||| ||||||||||||||||||||    
T  5686918 tgagataaacctgttggggccaatcaccctcctcttgttggagattgatgattaattttacagcacgatgaagaggagtagggtctctctc 5687008  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 680
Target Start/End: Original strand, 5666314 - 5666364
Alignment:
Q  630 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctct 680  Q
    ||||||||||| ||||||||||| |||||| ||||| ||||||||||||||    
T  5666314 aaccttttttgagcttgaaagatggctctctccccatccaccatcctctct 5666364  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 680
Target Start/End: Original strand, 5687384 - 5687434
Alignment:
Q  630 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctct 680  Q
    ||||||||||| || |||||||| |||||| ||||||||||||||||||||    
T  5687384 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctct 5687434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 543
Target Start/End: Original strand, 5719256 - 5719346
Alignment:
Q  453 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatatt 543  Q
    |||||| |||||||| ||| | || ||||||||||  || ||||||| ||| |||  ||||||||| ||||||||||||||||||| ||||    
T  5719256 ctggccagcatgaatcaaagctattagagcccatgatgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcattatt 5719346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 680
Target Start/End: Original strand, 5719500 - 5719550
Alignment:
Q  630 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctct 680  Q
    ||||||||||| || |||||||| |||||| ||||||||||||||||||||    
T  5719500 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctct 5719550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 444
Target Start/End: Complemental strand, 5601586 - 5601508
Alignment:
Q  366 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtct 444  Q
    |||||||||||||||  |||| ||||| |  || |||||||| |  || |||||||||||||| |||||||||||||||    
T  5601586 aacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtct 5601508  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 444
Target Start/End: Original strand, 5639034 - 5639112
Alignment:
Q  366 aacctgttggggccaatcgccttcttccaactgggaattgatgagcaattttgcagcacgatggagaggagtagggtct 444  Q
    |||||||||||||||  |||| ||||| |  || |||||||| |  || |||||||||||||| |||||||||||||||    
T  5639034 aacctgttggggccagccgccatcttctagttgcgaattgataattaaatttgcagcacgatgaagaggagtagggtct 5639112  T

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