View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_high_32 (Length: 376)
Name: NF20764_high_32
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 46520874 - 46521221
Alignment:
| Q |
9 |
tgaggagga-gcagagactgaagcaaacacatgccaattatgtgaaaggaaaaagctttactttgcaccagtaccaattgtttgttcatgttgtggcata |
107 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46520874 |
tgaggaggaagcagggactgaagcaaacacatgccaattatgtgaaaggaaaaagctttactttgcaccagtaccaattgtttgttcatgttgtggcata |
46520973 |
T |
|
| Q |
108 |
cgcgtcaagagaatatttttctgtagaaaagaagaattggatgtacagggttgcatttgttccatgtgttacaagacttctaaaggtgggaaaatcacat |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46520974 |
cgcgtcaagagaatatatttctgtagaaaagaagaattggatgtacagggttgcatttgctccatgtgttacaagacttctaaaggtgggaaaatcacat |
46521073 |
T |
|
| Q |
208 |
tcaatgggacatctatttctaagaaaaatctcgaaaaaaggactaacgatgaagtacttgaagaaccggtaagttttaaaatcgattactttataattca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46521074 |
tcaatgggacatctatttctaagaaaaatctcgaaaaaaggactaacgatgaagtacttgaagaaccggtaagttttaaaatcgattactttataattca |
46521173 |
T |
|
| Q |
308 |
gcttgatatacagagaactatgtaccaactctttatgactgttgtgtt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46521174 |
gcttgatatacagagaactatgtaccaactctttacgactgttgtgtt |
46521221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 328
Target Start/End: Original strand, 49880198 - 49880499
Alignment:
| Q |
30 |
gcaaacacatgccaattatgtgaaaggaaaaagctttactttgcaccagtaccaattgtttgttcatgttgtggcatacgcgtcaagagaatatttttct |
129 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||| ||||| | ||| | |
|
|
| T |
49880198 |
gcaaacacatgccaattatgtcaaaggaaaaagctttactttgcaccagtgccaattttttgttcatgttgtggcgtacgcatcaggagaacctattttt |
49880297 |
T |
|
| Q |
130 |
gtagaaaagaagaa---ttggatgtacagggttgcatttgttccatgtgttacaagacttctaaaggtgggaaaatcacattcaatgggacatctatttc |
226 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||||| ||| ||||||| || |||||||||||||||||||| |||||||||||| ||| | |||| |
|
|
| T |
49880298 |
gtagaaaagaagaagaatttgatgcacagggttgcatttgctccgtgtgttataaaacttctaaaggtgggaaaattacattcaatggggcatttgtttc |
49880397 |
T |
|
| Q |
227 |
taagaaaaatctcgaaaaaaggactaacgatgaagtacttgaagaaccggtaagttttaaaatcgattactttataattcagcttgatatacagagaact |
326 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||| |||||||||| |||||||| || ||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
49880398 |
taagacaaatctcgaaaaaaagaataacgatgaagtttttgaagaacccgtaagtttcaatatcgattgctatataattcagctttatatacagagaact |
49880497 |
T |
|
| Q |
327 |
at |
328 |
Q |
| |
|
|| |
|
|
| T |
49880498 |
at |
49880499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 30 - 317
Target Start/End: Complemental strand, 36849212 - 36848922
Alignment:
| Q |
30 |
gcaaacacatgccaattatgtgaaaggaaaaagctttactttgcaccagtaccaattgtttgttcatgttgtggcatacgcgtcaagagaatatttttct |
129 |
Q |
| |
|
|||||||| |||||||||||||||| | ||| ||||||||||||||||| ||| || |||||| | |||||| | ||| ||||||||| || ||||| |
|
|
| T |
36849212 |
gcaaacacttgccaattatgtgaaaaggaaagactttactttgcaccagtcccacttttttgtttacattgtggaaaccgcatcaagagaacatatttct |
36849113 |
T |
|
| Q |
130 |
gtagaaaagaagaa---ttggatgtacagggttgcatttgttccatgtgttacaagacttctaaaggtgggaaaatcacattcaatgggacatctatttc |
226 |
Q |
| |
|
||| ||||||||| || |||| ||| |||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36849112 |
gtacaaaagaagatgattttgatgcacatggttgcatttgttctacgtgttacaaaacttctaaaggtgggaaaattgcattcaatgggacatctatttc |
36849013 |
T |
|
| Q |
227 |
taagaaaaatctcgaaaaaaggactaacgatgaagtacttgaagaaccggtaagttttaaaatcgattactttataattcagcttgatata |
317 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
36849012 |
caagaaaaatcttgaaaaaaggaataatgatgaagtacttgaagaaccggtaagttttaagatccattactatataattcagcttgatata |
36848922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 174 - 352
Target Start/End: Complemental strand, 36860343 - 36860164
Alignment:
| Q |
174 |
tgttacaagacttctaaaggtgggaaaatcacattcaatgggacatctatttctaagaaaaatctcgaaaaaaggactaacgatgaagtacttgaagaac |
273 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |
|
|
| T |
36860343 |
tgttaaaagacttctaaaggtgagaaaatcacattcaatgggacatctatttctaagaaaaatcttgaaaaaaggaataatgatgaagtacttgaagaac |
36860244 |
T |
|
| Q |
274 |
cggtaagttttaaaat-cgattactttataattcagcttgatatacagagaactatgtaccaactctttatgactgttgt |
352 |
Q |
| |
|
||||||||||||| || | |||||| ||||||||||||||||||| ||| || | || ||||||||||||||||||| |
|
|
| T |
36860243 |
cggtaagttttaagatcccattactatataattcagcttgatatatagaaaaattaaaactaactctttatgactgttgt |
36860164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 153 - 317
Target Start/End: Original strand, 6678741 - 6678905
Alignment:
| Q |
153 |
cagggttgcatttgttccatgtgttacaagacttctaaaggtgggaaaatcacattcaatgggacatctatttctaagaaaaatctcgaaaaaaggacta |
252 |
Q |
| |
|
|||||||||||||| || |||||||||| | | |||||||| || || ||||||||||||||||||| || ||||||||||| | |||||||| || |
|
|
| T |
6678741 |
cagggttgcatttgctctgtgtgttacaatagtgttaaaggtgaaaatgtcgcattcaatgggacatctatatcaaagaaaaatcttgcaaaaaggaata |
6678840 |
T |
|
| Q |
253 |
acgatgaagtacttgaagaaccggtaagttttaaaatcgattactttataattcagcttgatata |
317 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||| ||| |||||||||||| |||| |||||||| |
|
|
| T |
6678841 |
atgatgaagtaattgaagaaccggtaagttttaatatcaattactttataagtcagtttgatata |
6678905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 246
Target Start/End: Original strand, 6619052 - 6619260
Alignment:
| Q |
33 |
aacacatgccaattatgtgaaaggaaaaagctttactttgcaccagtaccaattgttt-gttcatgttgtggcatacgcgtcaagagaatatttttctgt |
131 |
Q |
| |
|
||||| |||||||||||| ||||| |||| ||||| ||||||| ||| ||| || || ||| |||||||||||| || |||| |||| || ||||| | |
|
|
| T |
6619052 |
aacacttgccaattatgtaaaagggaaaaactttattttgcacgagtcccactttattagtttatgttgtggcatctgcatcaaaagaacatatttctat |
6619151 |
T |
|
| Q |
132 |
agaaaagaagaattggatgtacagggttgcatttgttccatgtgttacaagacttctaaaggtgggaaaatcacattcaatgggacatctatttctaaga |
231 |
Q |
| |
|
| |||||||||| ||| | ||||||||||| | |||||||||||||||||||||||| || |||| ||||||||| ||||||||||| |||| |
|
|
| T |
6619152 |
acaaaagaagaa---gatatt---ggttgcatttgctatgtgtgttacaagacttctaaaggtgagataatcgaattcaatggaacatctatttccaaga |
6619245 |
T |
|
| Q |
232 |
aaaatctcgaaaaaa |
246 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
6619246 |
aaaatcttgaaaaaa |
6619260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 6619369 - 6619295
Alignment:
| Q |
172 |
tgtgttacaagacttctaaaggtgggaaaatcacattcaatgggacatctatttctaagaaaaatctcgaaaaaa |
246 |
Q |
| |
|
||||||||||||||| |||||||| || ||| |||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
6619369 |
tgtgttacaagacttttaaaggtgagataattgcattcaatgggacatctatttccaagaaaaaactcgaaaaaa |
6619295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 317
Target Start/End: Original strand, 6667382 - 6667498
Alignment:
| Q |
201 |
atcacattcaatgggacatctatttctaagaaaaatctcgaaaaaaggactaacgatgaagtacttgaagaaccggtaagttttaaaatcgattacttta |
300 |
Q |
| |
|
||||||||||||||||||||| |||| |||| | ||| ||||||| ||| || ||||||||| || | ||||| |||||||||| | | ||| | || |
|
|
| T |
6667382 |
atcacattcaatgggacatctgtttcaaagacacttcttgaaaaaaagacaaatgatgaagtaattaatgaacctgtaagttttattaccctttaatata |
6667481 |
T |
|
| Q |
301 |
taattcagcttgatata |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6667482 |
taattcagcttgatata |
6667498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 18134779 - 18134940
Alignment:
| Q |
30 |
gcaaacacatgccaattatgtgaaaggaaaaagctttactttgcaccagtaccaattgtttgttcatgttgtggcatacgcgtcaagagaatatttttct |
129 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||| |||| ||| || |||| | || ||||| |||| || ||||||||| || ||||| |
|
|
| T |
18134779 |
gcaaacacaggccaattatgtgaaaggaaaaaactttactttgcatcagtcccacttttttgcttatattgtgacataagcatcaagagaacatatttct |
18134878 |
T |
|
| Q |
130 |
gtagaaaagaagaattggatgtacagggttgcatttgttccatgtgttacaagacttctaaa |
191 |
Q |
| |
|
| ||||||| |||||| ||| | ||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
18134879 |
gcagaaaagtagaatttaatgcagagggttgcatttgctgagtgtgttataagacttctaaa |
18134940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University