View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_high_34 (Length: 367)
Name: NF20764_high_34
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 357
Target Start/End: Original strand, 1702322 - 1702677
Alignment:
| Q |
3 |
gagtctttggatatctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctattctacaca |
102 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1702322 |
gagtctttggatgtctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctactctacaca |
1702421 |
T |
|
| Q |
103 |
acatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactcttt-caattttattgaatctt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
1702422 |
acatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctttccatttttattgaatctt |
1702521 |
T |
|
| Q |
202 |
tatgcctcgtccacgtcttctattttaaattcaaactcaaacactaacaagcactttccttctcatcatcctcttattattcaacaccttagccatccta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1702522 |
tatgcctcgtccacgtcttctattttaaattcaaactcaaacactagcaaacactttccttctcatcatcctcttattattcaacaccttaaccatccta |
1702621 |
T |
|
| Q |
302 |
ttattccttcaccttctcctcaaaattcaaactcatcacttatccctacacttctt |
357 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1702622 |
ttattcctccaccttctcctcaaaattcaaactcatcacttatccctacacctctt |
1702677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 26592018 - 26591960
Alignment:
| Q |
101 |
caacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagaca |
159 |
Q |
| |
|
|||||||||||||||||||| || || || ||||||||||| || |||||||| ||||| |
|
|
| T |
26592018 |
caacatcatgcctaccaatgctaccatcctcccactcaaaaattatatctctccagaca |
26591960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University