View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_high_4 (Length: 673)
Name: NF20764_high_4
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Original strand, 38784343 - 38784996
Alignment:
| Q |
1 |
catacatacatctatctcactctgcattggcattatatttcaaatgtgttttagttaactgatgaaagaatttgaaaattcaattgaagtaattaagcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38784343 |
catacatacatctatctcactctgcattggcattatatttcaaatgtgttttagttaactgatgaaagaatttgaaaattcaattgaagtaattaagcag |
38784442 |
T |
|
| Q |
101 |
catagcataaacaaaataaaatgaaaactcaagtgcatggctaagattttggaacttgttttaaattgcagacttagtgttggagctctaaaaggcaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38784443 |
catagcataaacaaaataaaatgaaaactcaagcgcatggctaagattttggaacttgttttaaattgcagacttagtgttggagctctaaaaggcaaag |
38784542 |
T |
|
| Q |
201 |
ggcgaacggaattgggctctctccacgagcatcaaattaatatgaaagatatgatcttcatgggaagactatgcattgccagtaattggttttgtttttc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38784543 |
ggcgaacggaattgggctctctccgcgagcatcaaattaatatgaaagatatgatcttcatgggaagactatgcattgccagtaattggttttgtttttc |
38784642 |
T |
|
| Q |
301 |
tttaatgtgtgttaatttcaaacgtagaaccttatggtttgtgtctttagttaattatttgaggttgttgtttaagagtgttaagagtctttccagatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38784643 |
tttaatgtgtgttaatttcaaacgtagaaccttatgttttgtgtctttagttaattatttgaggttgttgtttaagagtgttaagagtctttccagatat |
38784742 |
T |
|
| Q |
401 |
ggtttcacaaggatgaatgaagaaaaagaatttctatgattgtgtgctatttattaagcaattgaatgtaaagaaggaagcaattaaaataagatttggt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38784743 |
ggtttcacaaggatgaatgaagaaaaagaatttctatgattgtgtgctatttattaagcaattgaatgtaaagaaggaagcaatt-aaataagatttggt |
38784841 |
T |
|
| Q |
501 |
ttatggcttcacatgatgatatgatatgtagaagcaagtttaatgttcaaaagtaaggtatacatagttgcgacagtcataaaattcagcttcactttca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38784842 |
ttatggcttcacatgatgatatgatatgtagaagcaagtttaatgttcaaaagtaaggtatacatagttgcgacagtcataaaattcagcttcactttca |
38784941 |
T |
|
| Q |
601 |
gttctcctatacatgatgcgagagattttacattgcattgcattacatttgatag |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38784942 |
gttctcctatacatgatgcgagagattttacattgcattgcattacatttgatag |
38784996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 463 - 519
Target Start/End: Complemental strand, 52929753 - 52929697
Alignment:
| Q |
463 |
tgaatgtaaagaaggaagcaattaaaataagatttggtttatggcttcacatgatga |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
52929753 |
tgaatgtaaagaaggaagcaattaaaataagattctcttgatggcttcacatgatga |
52929697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 600
Target Start/End: Complemental strand, 52929696 - 52929631
Alignment:
| Q |
536 |
aagtttaatgttcaaaagtaaggtata-catagttgcgacagtcataaaattcagcttcactttca |
600 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| ||| ||| || ||||||||||| ||||| |||| |
|
|
| T |
52929696 |
aagtttaatgttgaaaagtaaggtataccataattgtgacggttataaaattcagtttcacattca |
52929631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University