View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_high_42 (Length: 315)
Name: NF20764_high_42
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 36773149 - 36772863
Alignment:
| Q |
18 |
tttatctatgattctatgaagcaagtgtgaattaggacatgaccttagtattaaacaataaagggttgtcacataggtcatgataaccaacagaattaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36773149 |
tttatctatgattctatgaagcaagtgtgaattaggacatgaccttagtattaaacaataaagggttgtcacataggtcatgataagcaacagaattaag |
36773050 |
T |
|
| Q |
118 |
gacagttttcggtcaggtatcagagttatgaagagtatgatccaaataaaaagtgtatagtatagccctatattcttcaagtttcttatgatgcgagatg |
217 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36773049 |
gacactttttggtcaggtatcagagttatgaagagtatcatccaaataaaaagtgtatagtatagccctatatgcttcaagtttcttatgatgcgagatg |
36772950 |
T |
|
| Q |
218 |
ccgcaacttcttgtgtcaagggaatgttaattgggcaatagaatttgaaattagcatatagtttttcatgtggtgattttggttcat |
304 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36772949 |
ctgcaacttcttgtgtcaagggaaggttaattgggcaatagaatttgaaattagcatatagtttttcatgtggtgattttggttcat |
36772863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 36770905 - 36770621
Alignment:
| Q |
18 |
tttatctatgattctatgaagcaagtgtgaattaggacatgaccttagtattaaacaataaagggttgtcacataggtcatgataaccaacagaattaag |
117 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
36770905 |
tttatctatgatcctatgaagcacaactgaattaggacatgcccttaatagtaaacaataaagggttgtcacataagtcatgataaccaacagaatcaac |
36770806 |
T |
|
| Q |
118 |
gacagttttcggtcaggtatcagagttatgaagagtatgatccaaataaaaagtgtatagtatagccctatattcttcaagtttcttatgatgcgagatg |
217 |
Q |
| |
|
|||| |||||| || ||||| || |||||||||||||||||||||||||| ||||| ||||||| ||| | |||| |||||||||||||||||||||| |
|
|
| T |
36770805 |
gacacttttcgttccggtatgagggttatgaagagtatgatccaaataaagagtgtgtagtataaccccaaattccctaagtttcttatgatgcgagatg |
36770706 |
T |
|
| Q |
218 |
ccgcaacttcttgtgtcaagggaatgttaattgggcaatagaatttgaaattagcatatagtttttcatgtggtgattttggttc |
302 |
Q |
| |
|
| ||| | |||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
36770705 |
ctgcagcatcttgtgttaaggggatgttaattgggcaatagaatttgagatcagcatatagtttttcatgtggtgattttggttc |
36770621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 16749153 - 16749222
Alignment:
| Q |
235 |
aagggaatgttaattgggcaatagaatttgaaattagcatatagtttttcatgtggtgattttggttcat |
304 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||| |||||| | ||||||||||||||||| |
|
|
| T |
16749153 |
aagggaatgataattgggcaatatcatttgaaatgagcatacagttttaattttggtgattttggttcat |
16749222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University