View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_high_48 (Length: 303)
Name: NF20764_high_48
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_48 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 36772555 - 36772848
Alignment:
| Q |
8 |
aaattattctaagattatttgacttgtttttaaatttaattttgaaagtctgcgtgaatgaagaatttgatgtcctctctggattttatatatgtatatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36772555 |
aaattattctaagattatttgacttgtttttaaatttaattttgaaagtctgcgtgaatgaagaatttgatgtcccctctggattttatatatgtatatc |
36772654 |
T |
|
| Q |
108 |
aagcattaaacagatacaagtctaatccacataagttgtggaaaacatttggaacaaatttctcaaataaattttgtgttcatcagaagctctttcaatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36772655 |
aagcattaaacagatacaagtctaatccacataagttgtggaaaacatttggaacaaatttctcaaataaattttgtgttcatcagaagctctttcaatt |
36772754 |
T |
|
| Q |
208 |
gatccattctttgattttccaatttccatttcaatgcttttatggcaaatcttggaactacacaaagaataccaacctcaaaaccttcatcccc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36772755 |
gatccattctttgattttccaatttccatttcaaagcttttatggcaaatcttggaactacacaaagaataccaacttcaaaaccttcatcccc |
36772848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 36770497 - 36770576
Alignment:
| Q |
200 |
tttcaattgatccattctttgattttccaatttccatttcaatgcttttatggcaaatcttggaactacacaaagaatac |
279 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| || ||||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
36770497 |
tttcaattgatccattctttgatttttcagttttcacttcaaaagtgtcatggcaaatcttggaactacacaaagaatac |
36770576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University