View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_high_5 (Length: 663)

Name: NF20764_high_5
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_high_5
NF20764_high_5
[»] chr3 (1 HSPs)
chr3 (1-649)||(52761508-52762155)


Alignment Details
Target: chr3 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 52762155 - 52761508
Alignment:
Q  1 acttgttcaattgatcattccaattgaatcagctcagcgatccatctcttaccttggcgatctcggcctttttcaattcaaagatgtatgaatcctttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52762155 acttgttcaattgatcattccaattgaatcagctcagcgatccatctcttaccttggcgatctcggcctttttcaattcaaagatgtatgaatcctttaa 52762056  T
Q  101 ttaccaatctttgtcctttctcactttgcattcttgatgacgcttcggactacattttccataatgttgagatgttcttcatctatctgaattagcatta 200  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52762055 ttaccaatctttgtcctt-ctcactttgtattctttatgacgcttcggactacattttccataatgttgagatgttcttcatctatctgaattagcatta 52761957  T
Q  201 tttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacctacgcttcacaggtacctataac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761956 tttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacctacgcttcacaggtacctataac 52761857  T
Q  301 atctatgtatgcatttaaaaaggttgagactcctcaatttcaaatgattgtgtattgaactccaaaacaattaaatgcttcttttgattttcatttggaa 400  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761856 atctatgtatgcatttaaaaaggttgagactcttcaatttcaaatgattgtgtattgaactccaaaacaattaaatgcttcttttgattttcatttggaa 52761757  T
Q  401 atttgaccaaaatctatcattatcatgaaatctaattctgctaacatttttattatgagacattttacacaactgatttactagaccagattggaaagct 500  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761756 atttgaccaagatctatcattatcatgaaatctaattctgctaacatttttattatgagacattttacacaactgatttactagaccagattggaaagct 52761657  T
Q  501 tacggttttatcaaataggttaaaagatgtggggaaatgtcccgtaagttgcgtttatttaaggagcaaatgaaaaaggcaaatatatctccgtcaacat 600  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761656 tacggttttatcaaataggttaaaagatgtggggaaatgtcgcgtaagttgcgtttatttaaggagcaaatgaaaaaggcaaatatatctccgtcaacat 52761557  T
Q  601 ggtcaacgagagatggttctattgatctagaaaaattggaggttgtcag 649  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52761556 ggtcaacaagagatggttctattgatctagaaaaattggaggttgtcag 52761508  T

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