View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_56 (Length: 288)
Name: NF20764_high_56
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 39522124 - 39522371
Alignment:
| Q |
1 |
ttttaagttatgaaattgatgattgctattcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataaga |
100 |
Q |
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| T |
39522124 |
ttttaagttatgaaattgatgattgctattcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataaga |
39522223 |
T |
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| Q |
101 |
ggaagactttagctgtggactggttaagtcgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttgaa |
200 |
Q |
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| T |
39522224 |
ggaagactttagctgtggactggttaagtcgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttgaa |
39522323 |
T |
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| Q |
201 |
agttgatttatcacctaccaataccatgactatagtataacacactct |
248 |
Q |
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| T |
39522324 |
agttgatttatcacctaccaataccatgactatagtataacacactct |
39522371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 39581306 - 39581459
Alignment:
| Q |
17 |
tgatgattgctattcatagaagttggtagaagtagggagtgg-agaagagaagggga--accaatgatgaagaagacatagataagaggaagactttagc |
113 |
Q |
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| T |
39581306 |
tgatgactgctattcatagaagttagtagaagtagggagtgggagaagagaagggggggaccaatga---agaagacttgcataagaagaagactctatc |
39581402 |
T |
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| Q |
114 |
tgtggactgg--ttaagtcgtcacctttgaattttcttatttcttgtttgtttctct |
168 |
Q |
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| T |
39581403 |
tgtggactgtgattaagttgtccgctttgaattttctttttccttatttgtttctct |
39581459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 39571647 - 39571722
Alignment:
| Q |
93 |
agataagaggaagactttagctgtggactg--gttaagtcgtcacctttgaattttcttatttcttgtttgtttct |
166 |
Q |
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| T |
39571647 |
agataagaggaagacttaagccgtggagtgtggttaagtcgtcagctttggattttcttcttccttgtttgtttct |
39571722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 39576831 - 39576906
Alignment:
| Q |
93 |
agataagaggaagactttagctgtggactg--gttaagtcgtcacctttgaattttcttatttcttgtttgtttct |
166 |
Q |
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| T |
39576831 |
agataagaggaagacttaagccgtggagtgtggttaagtctttagctttggattttcttcttccttgtttgtttct |
39576906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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