View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_57 (Length: 286)
Name: NF20764_high_57
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_57 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 5689896 - 5689655
Alignment:
| Q |
17 |
agaacttcaactttctgaagatgcaaaaatcattttggatgctttatacgcagcaatttctaagtaaatggattcggattcagctacttcacaagtatcg |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
5689896 |
agaacttcaactttctgaagatgcaaaaatcattttggatgctttatacgccacaatttctaaggaaatggattcgacttcagctacttctaaagtatca |
5689797 |
T |
|
| Q |
117 |
gatgtgaaaacttctgcagtaattcaacactgcagtcaattgcgtgcttccgaatcaaattannnnnnngaagtctgttctattacaactgggaattaat |
216 |
Q |
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| |||||||||||||| || ||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||| ||| |
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| T |
5689796 |
aacatgaaaacttctgcattagttcaacactgcagtcaattgcgtgctttcgaatcaaa-aaatttgttgaagtctgttctgttacaactgggaatgaat |
5689698 |
T |
|
| Q |
217 |
tccgaagccaccaataatctgaaagaaaacattttacaggttt |
259 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
5689697 |
tccgaagtcaccaataatctgaaagaaaacattttaaaggttt |
5689655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 5278913 - 5279154
Alignment:
| Q |
17 |
agaacttcaactttctgaagatgcaaaaatcattttggatgctttatacgcagcaatttctaagtaaatggattcggattcagctacttcacaagtatcg |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||| |||||| ||| ||||||||||||||||| |
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| T |
5278913 |
agaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaatttctaaggaaattgattcgacttctgctacttcacaagtatca |
5279012 |
T |
|
| Q |
117 |
gatgtgaaaacttctgcagtaattcaacactgcagtcaattgcgtgcttccgaatcaaattannnnnnngaagtctgttctattacaactgggaattaat |
216 |
Q |
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|| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| ||| |
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| T |
5279013 |
aatatgaacacttctgcattaattcaacactgcagtcaattgcgtgcttccgaatcaaaata-tttgttgaagtctgttctactacaactgggaatgaat |
5279111 |
T |
|
| Q |
217 |
tccgaagccaccaataatctgaaagaaaacattttacaggttt |
259 |
Q |
| |
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|| |||| |||||||||||||||||||| ||||||| |||||| |
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| T |
5279112 |
tctgaagtcaccaataatctgaaagaaagcattttataggttt |
5279154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 5177086 - 5177327
Alignment:
| Q |
17 |
agaacttcaactttctgaagatgcaaaaatcattttggatgctttatacgcagcaatttctaagtaaatggattcggattcagctacttcacaagtatcg |
116 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||| |||||| ||| ||||||||| || |||| |
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| T |
5177086 |
agaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaatttctaaggaaattgattcgacttctgctacttcaaaaatatca |
5177185 |
T |
|
| Q |
117 |
gatgtgaaaacttctgcagtaattcaacactgcagtcaattgcgtgcttccgaatcaaattannnnnnngaagtctgttctattacaactgggaattaat |
216 |
Q |
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|| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| ||| |
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| T |
5177186 |
aatatgaacacttctgcattaattcaacactgcagtcaattgcgtgcttccgaatcaaaata-tttgttgaagtctgttctactacaactgggaatgaat |
5177284 |
T |
|
| Q |
217 |
tccgaagccaccaataatctgaaagaaaacattttacaggttt |
259 |
Q |
| |
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|| |||| |||||||||||||||||||| |||||||||||||| |
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| T |
5177285 |
tctgaagtcaccaataatctgaaagaaagcattttacaggttt |
5177327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 5345205 - 5345445
Alignment:
| Q |
17 |
agaacttcaactttctgaagatgcaaaaatcattttggatgctttatacgcagcaatttctaagtaaatggattcggattcagctacttcacaagtatcg |
116 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||||| ||| ||||||||||||||||| ||| |
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| T |
5345205 |
agaactacaactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaaggaaatggaatcgatttcagctacttcacaagcatca |
5345304 |
T |
|
| Q |
117 |
gatgtgaaaacttctgcagtaattcaacactgcagtcaattgcgtgcttccgaatcaaattannnnnnngaagtctgttctattacaactgggaattaat |
216 |
Q |
| |
|
||| |||||||||||||| ||||||||| ||||| |||||||| | |||| |||| | | |||||||||||| ||||| ||||||| ||| |
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| T |
5345305 |
gatatgaaaacttctgcattaattcaacgctgcattcaattgcacggttccagatcagaagattactta-aagtctgttctaatacaaatgggaatgaat |
5345403 |
T |
|
| Q |
217 |
tccgaagccaccaataatctgaaagaaaacattttacaggtt |
258 |
Q |
| |
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| | ||| ||||||||||| ||||||||||||||||||||| |
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| T |
5345404 |
ttccaagtaaccaataatctaaaagaaaacattttacaggtt |
5345445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 5243650 - 5243408
Alignment:
| Q |
17 |
agaacttcaactttctgaagatgcaaaaatcattttggatgctttata-cgcagcaatttctaagtaaatggattcggattcagctacttcacaagtatc |
115 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||| ||||| | | || |||||||| ||||||| ||| ||||||||||||||||| ||| |
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| T |
5243650 |
agaactacaactttctgaagatgcacaaatcattttggatgccttataacaccacattttctaaggaaatggaatcgacttcagctacttcacaagcatc |
5243551 |
T |
|
| Q |
116 |
ggatgtgaaaacttctgcagtaattcaacactgcagtcaattgcgtgcttccgaatcaaattannnnnnngaagtctgttctattacaactgggaattaa |
215 |
Q |
| |
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|| |||||||||||||| ||||||||| |||| |||||||| | |||| |||| | | |||||||||||| ||||| ||||||| || |
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| T |
5243550 |
aaatatgaaaacttctgcattaattcaacgttgcaatcaattgcaagtttccagatcagaagattactta-aagtctgttctaatacaaatgggaatgaa |
5243452 |
T |
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| Q |
216 |
ttccgaagccaccaataatctgaaagaaaacattttacaggttt |
259 |
Q |
| |
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|| | ||| ||||||||||| |||||||||||||||||||||| |
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| T |
5243451 |
ttgccaagtaaccaataatctaaaagaaaacattttacaggttt |
5243408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 5066431 - 5066190
Alignment:
| Q |
17 |
agaacttcaactttctgaagatgcaaaaatcattttggatgctttatacgcagcaatttctaagtaaatggattcggattcagctacttcacaagtatcg |
116 |
Q |
| |
|
||||| |||||||||| | ||||||| ||| || ||||||||||||||||| | |||||||| | |||| ||| |||||||||||||||| |||| |
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| T |
5066431 |
agaacatcaactttctaatgatgcaacaataatattggatgctttatacgctactctttctaaggatgtggaatcgacttcagctacttcacaaatatca |
5066332 |
T |
|
| Q |
117 |
gatgtgaaaacttctgcagtaattcaacactgcagtcaattgcgtgcttccgaatca-aattannnnnnngaagtctgttctattacaactgggaattaa |
215 |
Q |
| |
|
|| ||| |||||||||| ||| |||||| ||| |||||||| || | || ||| || | ||||||||||||| ||||| |||| || || |
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| T |
5066331 |
aatatgataacttctgcattaactcaacattgcgatcaattgcatgttccctgttcagaact--ttccatgaagtctgttctaatacaaatgggtatgaa |
5066234 |
T |
|
| Q |
216 |
ttccgaagccaccaataatctgaaagaaaacattttacaggttt |
259 |
Q |
| |
|
|| | ||| |||||||||||||||||||||||| |||||||||| |
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| T |
5066233 |
ttgccaagtcaccaataatctgaaagaaaacatgttacaggttt |
5066190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 5434537 - 5434573
Alignment:
| Q |
22 |
ttcaactttctgaagatgcaaaaatcattttggatgc |
58 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||| |
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| T |
5434537 |
ttcaactttctgaagatgcaaagataattttggatgc |
5434573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 22583980 - 22583934
Alignment:
| Q |
21 |
cttcaactttctgaagatgcaaaaatcattttggatgctttatacgc |
67 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||| |||| ||||| |
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|
| T |
22583980 |
cttcaactttctaaagatggaaaaatcattttggattctttttacgc |
22583934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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