View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_68 (Length: 254)
Name: NF20764_high_68
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_68 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 6516792 - 6517008
Alignment:
| Q |
15 |
gtgagatgaaaccaggaaacattctcttagacaaaaactacgttagcaagatcagtgatgttggtttggcgcgactcgttcctgcttcgatagccaacaa |
114 |
Q |
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| T |
6516792 |
gtgatatgaaaccaggaaacattctcttagacaaaaactacgttagcaagatcagtgatgttggtttggcgcgactcgttcctgcttcaatagccaacaa |
6516891 |
T |
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| Q |
115 |
aaccactcaatatcgcatgacaggtgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattt |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6516892 |
aaccactcaatatcgcatgacaggcgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattt |
6516991 |
T |
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| Q |
215 |
tcatttggtatgatttt |
231 |
Q |
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||||||||||||||||| |
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| T |
6516992 |
tcatttggtatgatttt |
6517008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 42673949 - 42674145
Alignment:
| Q |
23 |
aaaccaggaaacattctcttagacaaaaactacgttagcaagatcagtgatgttggtttggcgcgactcgttcctgcttcgatagccaacaaaaccactc |
122 |
Q |
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| T |
42673949 |
aaaccagcaaacattctcttagacagaaactacgtaagcaagatcagcgatgttggtttggcaaggcttgttccaccttctgtagaaaacaaaactaccg |
42674048 |
T |
|
| Q |
123 |
aatatcgcatgacaggtgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatt |
219 |
Q |
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| T |
42674049 |
aatatcacaagacaaatgcagccggaacatttttttatattgatccggagtatcaacaaacaggactattgggcgtaaaatcagacatatattcatt |
42674145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 50439406 - 50439297
Alignment:
| Q |
122 |
caatatcgcatgacaggtgcagctggaacattttgctacattgatcctgagtatcaacaaactggattattgggtgtgaaatcagatatattttcatttg |
221 |
Q |
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|||||||||||||| | |||| |||||||| || || || |||||||||||||| ||||| ||| | || ||||||||||||||| ||| |||| ||| |
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| T |
50439406 |
caatatcgcatgacggcaacagcaggaacattctgttatatagatcctgagtatcagcaaacaggaatgttaggtgtgaaatcagatgtatattcacttg |
50439307 |
T |
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| Q |
222 |
gtatgatttt |
231 |
Q |
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| || ||||| |
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| T |
50439306 |
gaatcatttt |
50439297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 48235755 - 48235715
Alignment:
| Q |
143 |
gctggaacattttgctacattgatcctgagtatcaacaaac |
183 |
Q |
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| T |
48235755 |
gctggaacattttgttatattgatcccgagtatcaacaaac |
48235715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 3686625 - 3686683
Alignment:
| Q |
23 |
aaaccaggaaacattctcttagacaaaaactacgttagcaagatcagtgatgttggttt |
81 |
Q |
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||||||| |||||||||||||||||||| | |||||||| || |||||||||||||| |
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| T |
3686625 |
aaaccagccaacattctcttagacaaaaattttgttagcaaaataagtgatgttggttt |
3686683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 3686724 - 3686780
Alignment:
| Q |
122 |
caatatcgcatgacaggtgcagctggaacattttgctacattgatcctgagtatcaa |
178 |
Q |
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||||||| |||||| | |||||||||||||| || ||||||||||| ||||||||| |
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| T |
3686724 |
caatatcacatgactgaagcagctggaacattatgttacattgatccagagtatcaa |
3686780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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