View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_81 (Length: 246)
Name: NF20764_high_81
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_81 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3899577 - 3899351
Alignment:
| Q |
1 |
tattttttcaaatacaataattcaaaaggannnnnnn-gttagaaaatcacatggatcttttgaaagtcggttnnnnnnnnnnnnatctaaataggattt |
99 |
Q |
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| T |
3899577 |
tattttttcaaatacaataattcaaaaggattttttttgttagaaaatcacatggatcttttgaaagtcggtttttctctc----atctaaataggattt |
3899482 |
T |
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| Q |
100 |
taagttagaaaaaataaaagcgtaaatatatgctgagattcaaaagattaagatgaggtaaaattgtgttttagttgatcattaacttgtataataagat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3899481 |
taagttagaaaaaataaaagcgtaaatatatgctgagattcaaaagattaagatgaggtaaaattgtgttttagttgatcattaacttgcataataagat |
3899382 |
T |
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| Q |
200 |
aactagagaaagatttattttgttacaaaac |
230 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
3899381 |
aattagagaaagatttattttgttacaaaac |
3899351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3889761 - 3889732
Alignment:
| Q |
1 |
tattttttcaaatacaataattcaaaagga |
30 |
Q |
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| T |
3889761 |
tattttttcaaatacaataattcaaaagga |
3889732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 5827 - 5682
Alignment:
| Q |
85 |
atctaaataggattttaagttagaaaaaataaaagcgtaaatatatgctgagattcaaaagattaagatgaggtaaaattgtgttttagttgatcattaa |
184 |
Q |
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| T |
5827 |
atctaaataggattttaagttagaaaaaataaaagcgtaaatatatgctgagattcaaaagattaagattaggtaaaattgtgttttagttgatcattaa |
5728 |
T |
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| Q |
185 |
cttgtataataagataactagagaaagatttattttgttacaaaac |
230 |
Q |
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| T |
5727 |
cttgcataataagataattagagaaagatttattttgttacaaaac |
5682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6724 - 6695
Alignment:
| Q |
1 |
tattttttcaaatacaataattcaaaagga |
30 |
Q |
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| T |
6724 |
tattttttcaaatacaataattcaaaagga |
6695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 54852028 - 54852132
Alignment:
| Q |
85 |
atctaaataggattttaagttagaaaaaata--aaagcgtaaatatatgctgagat-tcaaaagattaagatgaggtaaaattgtgttttagttgatcat |
181 |
Q |
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||||||||||||||||| |||| |||| | | |||| ||||||||||| |||| | |||||||||||||||| || |||||||| |||| || |||||| |
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| T |
54852028 |
atctaaataggatttta-gttacaaaagacacaaaagggtaaatatatgttgaggtgtcaaaagattaagatggggcaaaattgtatttttgtagatcat |
54852126 |
T |
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| Q |
182 |
taactt |
187 |
Q |
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|||||| |
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| T |
54852127 |
taactt |
54852132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 54855797 - 54855867
Alignment:
| Q |
115 |
aaaagcgtaaatatatgctgagat-tcaaaagattaagatgaggtaaaattgtgttttagttgatcattaa |
184 |
Q |
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||||| |||||||||||| ||| | ||||||||||||||||| | |||||||| |||| || ||||||||| |
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| T |
54855797 |
aaaagggtaaatatatgccgaggtgtcaaaagattaagatgaagcaaaattgtatttttgtagatcattaa |
54855867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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