View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_87 (Length: 231)
Name: NF20764_high_87
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_87 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 30274753 - 30274559
Alignment:
| Q |
16 |
tattcttaaaactcctctgattagtcaagtggctgttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggc |
115 |
Q |
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| T |
30274753 |
tattcttaaaactcctctgattagtcaagtggctgttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggc |
30274654 |
T |
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| Q |
116 |
agtcattgc-gataattcatttttacattgccccggtaattgggctagtatttggagattgaaggtccctctgaaagtgaaaaatttgttatggc |
209 |
Q |
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| T |
30274653 |
agtcattgcggataattcattttcacatcgccctggtaattgggctagtatttggagattgaaggtccctccgaaagtgaaaaatttgttatggc |
30274559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 32794857 - 32795007
Alignment:
| Q |
50 |
gttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggcagtcattgcg-ataattcatttttacattgcccc |
148 |
Q |
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| T |
32794857 |
gttaatatagaatttagagaaaaatggtcattattctgttagaagtgtgtatcgactgtgtatggaagttatcacgaataattcatttctacaccgtccc |
32794956 |
T |
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| Q |
149 |
ggtaattgggctagtatttggagattgaaggtccctctgaaagtgaaaaat |
199 |
Q |
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| T |
32794957 |
ggtaattggtctagtatttgaaaattaaaggttccttcgaaagtgagaaat |
32795007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 14151376 - 14151230
Alignment:
| Q |
51 |
ttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggcagtcattgcg-ataattcatttttacattgccccg |
149 |
Q |
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||||||||||||||||| ||||||||| ||||||| |||||||| | ||||| | || ||||| ||| |||||| ||||||||||||| ||| | || | |
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| T |
14151376 |
ttaatttggaaattagaaaaaaatggttgttattcggttagaagggcatatcgaccgtatatggaagttattgcggataattcatttttgcatcgtcctg |
14151277 |
T |
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| Q |
150 |
gtaattgggctagtatttggagattgaaggtccctctgaaagtgaaa |
196 |
Q |
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| T |
14151276 |
gtaattggtctagtatctggaatttgaaggtccctccgaaagtgaaa |
14151230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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