View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_high_9 (Length: 587)
Name: NF20764_high_9
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 37556966 - 37556375
Alignment:
| Q |
1 |
ctgaaaaattctgtagattcaggtgtgtcattagatgaccctgcattatcaggcagctcccattcaggatggcctgctctttttgcagcctctttgaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37556966 |
ctgaaaaattctgtagattcaggtgtgtcattagatgaccctgcattatcaggcagctcccattcaggatggcctgctctttttgcagcgtctttgaaat |
37556867 |
T |
|
| Q |
101 |
cggcttgaagatatttgtcatagcactgcaatatttaagatgcaagcacataaagtttgtgaatttaaatagtttttgact------tattgatatgagt |
194 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
37556866 |
cagcttgaagatatttgtcatagcactgcaatatttaagatgcgagtacataaagtttgtgaattgaaatagtttttgactctatgttattgatatgagt |
37556767 |
T |
|
| Q |
195 |
agtaaatatataatgtcaagttgaaaccctttttgttttggattcggatactctccatcattgcagcgatgcagcaannnnnnnaactaggac-----ag |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||| || ||||||||| || |
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| T |
37556766 |
agtaaatatataatgtcaagttgaaaccctttttgttttggactcggatactctccaacgttgcagcagtgcagaaatttttttaactaggactggaaag |
37556667 |
T |
|
| Q |
290 |
atatcactggtatgatagcacttttt-actcttaatattgtttgctgctccgtgagagaggatccgagtcgatttgttttcat-acaatgttatgtggaa |
387 |
Q |
| |
|
||| |||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
37556666 |
ataccacttgtgcgatagcacttttttactcttattattgtttgctgctccgtgagagaggatccgagtcgatttgttttcaacacaatgttacgtggaa |
37556567 |
T |
|
| Q |
388 |
ctgtgcacaaattcctatagcaaaaaattcacaaactcacattaaattctccaataccaggaaatacccagcctagagattctgcataagaaggatatct |
487 |
Q |
| |
|
|| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37556566 |
ctttgcacaaatttctacagcaaaaaattcacaaactcacattaaattctccaataccaggaaatacccagcctagagattctgcataagaaggatatct |
37556467 |
T |
|
| Q |
488 |
gagttctccagcagggccaagtcctacttcaatgtctatcagtagctccgattctaagaaatctgccatattctctctaaaactcttcatat |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37556466 |
gagttctccagcagggccaagtcctacttcaatgtctatcagtagctccgattctaagaaatctgccatattctctctaaaactcttcatat |
37556375 |
T |
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