View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_high_94 (Length: 209)

Name: NF20764_high_94
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_high_94
NF20764_high_94
[»] chr1 (7 HSPs)
chr1 (19-89)||(4008169-4008239)
chr1 (139-185)||(4014680-4014726)
chr1 (139-185)||(4571209-4571255)
chr1 (139-194)||(21855098-21855153)
chr1 (139-185)||(4016514-4016560)
chr1 (145-194)||(10219291-10219340)
chr1 (139-179)||(17563902-17563942)
[»] chr5 (1 HSPs)
chr5 (139-194)||(24330614-24330669)
[»] chr7 (4 HSPs)
chr7 (145-185)||(29921726-29921766)
chr7 (140-186)||(29881564-29881610)
chr7 (139-179)||(29476037-29476077)
chr7 (140-186)||(29872021-29872067)
[»] chr4 (1 HSPs)
chr4 (145-185)||(29945856-29945896)
[»] chr2 (4 HSPs)
chr2 (145-185)||(29571551-29571591)
chr2 (145-185)||(29578340-29578380)
chr2 (145-185)||(29580895-29580935)
chr2 (145-185)||(29610184-29610224)


Alignment Details
Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 4008169 - 4008239
Alignment:
Q  19 aagagataatccaaattctgttcacaatgatgttatacagtgcaaacgttacaaggaaacaactatcccaa 89  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  4008169 aagagataatcctaattctgtccacaatgattttatacagtgcaaacgttacaaggaaacagctatcccaa 4008239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 4014680 - 4014726
Alignment:
Q  139 aagagaaacttactttcaaacaattggaactaagctttcaacataat 185  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  4014680 aagagaaacttactttcaaaaaattggaactaagctttcaacataat 4014726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 4571255 - 4571209
Alignment:
Q  139 aagagaaacttactttcaaacaattggaactaagctttcaacataat 185  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  4571255 aagagaaacttactttcaaaaaattggaactaagctttcaacataat 4571209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 21855098 - 21855153
Alignment:
Q  139 aagagaaacttactttcaaacaattggaactaagctttcaacataattgttggcat 194  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||  |||||||    
T  21855098 aagagaaacttactttcaaaaacttggaactaagctttcaacataatcattggcat 21855153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 4016514 - 4016560
Alignment:
Q  139 aagagaaacttactttcaaacaattggaactaagctttcaacataat 185  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||    
T  4016514 aagagaaacttactttcaaaaaattggaactaaactttcaacataat 4016560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 10219340 - 10219291
Alignment:
Q  145 aacttactttcaaacaattggaactaagctttcaacataattgttggcat 194  Q
    |||||||||| ||  |||||| ||||||||||||||||||| ||||||||    
T  10219340 aacttacttttaaggaattgggactaagctttcaacataatcgttggcat 10219291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 17563902 - 17563942
Alignment:
Q  139 aagagaaacttactttcaaacaattggaactaagctttcaa 179  Q
    ||||| |||||||||||||| ||| ||||||||||||||||    
T  17563902 aagaggaacttactttcaaaaaataggaactaagctttcaa 17563942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 24330614 - 24330669
Alignment:
Q  139 aagagaaacttactttcaaacaattggaactaagctttcaacataattgttggcat 194  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||  |||||||    
T  24330614 aagagaaacttactttcaaaaacttggaactaagctttcaacataatcattggcat 24330669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 29921726 - 29921766
Alignment:
Q  145 aacttactttcaaacaattggaactaagctttcaacataat 185  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  29921726 aacttactttcaaaaaattggaactaagctttcaacataat 29921766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 29881610 - 29881564
Alignment:
Q  140 agagaaacttactttcaaacaattggaactaagctttcaacataatt 186  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||    
T  29881610 agaggaacttactttcaaaaaattgaaactaagctttcaacataatt 29881564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 29476037 - 29476077
Alignment:
Q  139 aagagaaacttactttcaaacaattggaactaagctttcaa 179  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  29476037 aagagaaacttactttcaaaaaattgaaactaagctttcaa 29476077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 29872067 - 29872021
Alignment:
Q  140 agagaaacttactttcaaacaattggaactaagctttcaacataatt 186  Q
    |||| |||||||||||||| ||||| |||||| ||||||||||||||    
T  29872067 agaggaacttactttcaaaaaattgaaactaaactttcaacataatt 29872021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 29945896 - 29945856
Alignment:
Q  145 aacttactttcaaacaattggaactaagctttcaacataat 185  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  29945896 aacttactttcaaaatattggaactaagctttcaacataat 29945856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 29571551 - 29571591
Alignment:
Q  145 aacttactttcaaacaattggaactaagctttcaacataat 185  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  29571551 aacttactttcaaaatattggaactaagctttcaacataat 29571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 29578340 - 29578380
Alignment:
Q  145 aacttactttcaaacaattggaactaagctttcaacataat 185  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  29578340 aacttactttcaaaatattggaactaagctttcaacataat 29578380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 29580895 - 29580935
Alignment:
Q  145 aacttactttcaaacaattggaactaagctttcaacataat 185  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  29580895 aacttactttcaaaatattggaactaagctttcaacataat 29580935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 29610184 - 29610224
Alignment:
Q  145 aacttactttcaaacaattggaactaagctttcaacataat 185  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  29610184 aacttactttcaaaatattggaactaagctttcaacataat 29610224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University