View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_low_1 (Length: 916)
Name: NF20764_low_1
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Original strand, 50946883 - 50947418
Alignment:
| Q |
17 |
gcaagaaacctttcacttgtttattttagttagtaaggattgaaccctaattgggacaaaagaaagatgaaggtgaagtgttgcgacggcgttgtgtttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50946883 |
gcaagaaacctttcacttgtttattttagttagtaaggattgaaccctaattgggacaaaagaaagatgaaggtgaagtgttgcgacggcgttgtgtttg |
50946982 |
T |
|
| Q |
117 |
agcttgaagatgctttggtgtatgcatcttcgactgtcaaaaaattgatagtggaaaatatatctagcagaggatgctttggtggatgcctcttcggcag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50946983 |
agcttgaagatgctttggtgtatgcatcttcgactgtcaaaaaattgatagtggaaaatatatctagcagaggatgctttggtggatgcctcttcggcag |
50947082 |
T |
|
| Q |
217 |
cgcgcagggtgatagttgtgagatcagttttgctgaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccgga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50947083 |
cgcgcagggtgatagttgtgagatcagttttgctgaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccgga |
50947182 |
T |
|
| Q |
317 |
gataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttag-ttgtttttnnnnnnnn |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
50947183 |
gataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttagttttttttttttctttt |
50947282 |
T |
|
| Q |
416 |
nnnnnnatgtcatatttatattcttacatgtaacatcatgatgttagtttaattaatttggagttaaaatttgagattctgtttgctatgggaaatttat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50947283 |
tttctcatgtcatatttatattcttacatgtaacatcatgatgttagtttaattaatttggagttaaaatttgagattctgtttgctatgtgaaatttat |
50947382 |
T |
|
| Q |
516 |
gttgagatataatcaatttcctaacttggttggtta |
551 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50947383 |
gttgagatataatcaatttcctaacttcgttggtta |
50947418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 559 - 907
Target Start/End: Original strand, 50947480 - 50947828
Alignment:
| Q |
559 |
ttagtgtcttttggtcttttttaacccattggttgtctaacgagctgtgtattttattgtgtcagatttaccattcattgtggctgattgtgtcaatgac |
658 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50947480 |
ttagtgtcttttggtcttttttaaccctttggttgtctaacgacctgtgtattttattgtgtcagatttaccattcattgtggctgattgtgtcaatgac |
50947579 |
T |
|
| Q |
659 |
ttaagtcaaagaatcagagttattctgatttaaatgatttcctaaaatagagccagctatataatcactgtaaatatacagagaaaatcaattgaataga |
758 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50947580 |
ttaagtcaaagaatcagagttattctgatttaaatgatttcctaaaatagagccagctatataatcactgtaaatatacagagaaaatcaattgaataga |
50947679 |
T |
|
| Q |
759 |
aacattattaccaattctctgtcatttcaatattctcaacaaaaaactaataaaaacgaccattgaaaattcatagtttggtcataagctacataagtta |
858 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50947680 |
aacatttttaccaagtctctgtcatttcaatattctcaacaaaaaactaataaaaatgaccattgaaaattcatagtttggtcataagctaaataagtta |
50947779 |
T |
|
| Q |
859 |
accagatattgttatagccggattaacttggatataccccgagtataat |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50947780 |
accagatattgttatagccggattaacttggatataccccgagtataat |
50947828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 76 - 407
Target Start/End: Original strand, 50956454 - 50956785
Alignment:
| Q |
76 |
aagaaagatgaaggtgaagtgttgcgacggcgttgtgtttgagcttgaagatgctttggtgtatgcatcttcgactgtcaaaaaattgatagtggaaaat |
175 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
50956454 |
aagaaatatgaaggtaaagtgttgtgacggtgttgtgttgaagcttgaagatgctttggtgtatgcatcttctactgtcaaaaaattgataggagaaaat |
50956553 |
T |
|
| Q |
176 |
atatctagcagaggatgctttggtggatgcctcttcggcagcgcgcagggtgatagttgtgagatcagttttgctgaagagatatctagcgaaactctgt |
275 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||| | ||||| || | |||||||||||||||| | ||||||||| ||| ||||||||| |
|
|
| T |
50956554 |
atatctagcagaggatgcttaagtgtatgcctcctcggcgccagccagggcgagaactgtgagatcagttttgtagtagagatatccagccaaactctgt |
50956653 |
T |
|
| Q |
276 |
tgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagttgatcgccacac |
375 |
Q |
| |
|
|||| |||||||| || || ||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
50956654 |
tgaagatcaatgaatatgtaaagaagcatgcagatgctggagataatgaaaaaagtctccgtaattgggaccttgaattcatcaaagttgatcgccacac |
50956753 |
T |
|
| Q |
376 |
actgtttgcgctagtcttggttagttgttttt |
407 |
Q |
| |
|
||||||| |||||||||||||||| ||||| |
|
|
| T |
50956754 |
tttgtttgccctagtcttggttagttattttt |
50956785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 15854747 - 15855131
Alignment:
| Q |
18 |
caagaaacctttcacttgtttattttagttagtaaggattgaaccctaattgggacaaaagaaagatgaaggtgaagtgttgcgacggcgttgtgtttga |
117 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||| || |||||||||||| || ||||| ||||||||||||||||| |||||||||||||| || |
|
|
| T |
15854747 |
caagaaacctttca---gtttattttt-ttaataagaatcgaaccctaattgtgattgaagaagtatgaaggtgaagtgttgtgacggcgttgtgttgga |
15854842 |
T |
|
| Q |
118 |
gcttgaagatgctttggtgtatgcatcttcgactgtcaaaaaattgatagtggaaaatatatctagcagaggatgctttggtggatgcctcttcggcagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||| || ||| ||||| ||||||| || |
|
|
| T |
15854843 |
gcttgaagatgctttggtgtatgcatcttcgactgtccaaaaattgatagaaaaaaatatatccagcagaggatgcattagtgtatgccacttcggcggc |
15854942 |
T |
|
| Q |
218 |
gcgcagggtgatagttgtgagatcagttttgctgaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggag |
317 |
Q |
| |
|
| ||||| ||| || |||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||| || ||||| |||| | |||| ||| |
|
|
| T |
15854943 |
ggccagggcaataattttgagatcagttttgaagaagagatatctagaaaaactctgttgaagatcaaagagtatgtaaagaagcatgaagatgctagag |
15855042 |
T |
|
| Q |
318 |
ataatgaaaaaagtctccgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttagttgtttt |
406 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||||||||| ||||||||| || ||| ||||||| ||||||||||||||| |||| |
|
|
| T |
15855043 |
ataatgaaaaaagtctccgtatttgggatcaagagttcatcaaagttgatcaccgtacattgtttgctatagtcttggttagttatttt |
15855131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 76 - 312
Target Start/End: Original strand, 50963389 - 50963622
Alignment:
| Q |
76 |
aagaaagatgaaggtgaagtgttgcgacggcgttgtgtttgagcttgaagatgctttggtgtatgcatcttcgactgtcaaaaaattgatagtggaaaat |
175 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
50963389 |
aagaaatatgaaggtgaagtgttgcgacggtattgtgttggagcttgaagatgctttggtgtatgcatctttgactgtcaaacaattgatagatgaaaag |
50963488 |
T |
|
| Q |
176 |
atatctagcagaggatgctttggtggatgcctcttcggcagcgcgcagggtgatagttgtgagatcagttttgctgaagagatatctagcgaaactctgt |
275 |
Q |
| |
|
||| |||||||| |||||||||||| ||| |||||| | || ||| || | || ||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
50963489 |
atacctagcagaagatgctttggtgtatggatcttcgacggc---aaggacgagaattacgagatcagttttgaaaaggagatatctagcaaaactctgt |
50963585 |
T |
|
| Q |
276 |
tgaaaatcaatgagtacgtgaagaaacatgcatatgc |
312 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
50963586 |
tgaagatcaatgagtacgtgaagaagcatgcagatgc |
50963622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 50963653 - 50963726
Alignment:
| Q |
328 |
aagtctccgtagttgggaccttgagttcatcgaagttgatcgccacacactgtttgcgctagtcttggttagtt |
401 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
50963653 |
aagtctccgttcctgggaccttgagttcatcaaagttgatcgccacacattgtttgccctagtcttggttagtt |
50963726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 450 - 546
Target Start/End: Original strand, 50956807 - 50956904
Alignment:
| Q |
450 |
atcatgatgttagtttaattaatttggagttaaaatttgagattctgtttgctatg-ggaaatttatgttgagatataatcaatttcctaacttggtt |
546 |
Q |
| |
|
|||||| ||||||||||| || |||||||| |||||||||||||| |||||||||| |||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
50956807 |
atcatggtgttagtttaagtattttggagtcaaaatttgagattcggtttgctatgttaaaatttatattgagctggaatcaatttcctaacttggtt |
50956904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 460 - 541
Target Start/End: Original strand, 15855230 - 15855310
Alignment:
| Q |
460 |
tagtttaattaatttggagttaaaatttgagattctgtttgctatgggaaatttatgttgagatataatcaatttcctaact |
541 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||||||||| ||| ||||||||| ||||||| ||||||| | |||||| |
|
|
| T |
15855230 |
tagtttaagtattttggagttaaaattt-agattctgtttgcaatgtgaaatttatactgagatagaatcaatatactaact |
15855310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 439 - 485
Target Start/End: Original strand, 50963770 - 50963816
Alignment:
| Q |
439 |
ttacatgtaacatcatgatgttagtttaattaatttggagttaaaat |
485 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
50963770 |
ttacatgtaacataatgatgttagtttatgtattttggagttaaaat |
50963816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 51 - 547
Target Start/End: Original strand, 33630196 - 33630696
Alignment:
| Q |
51 |
aaggattgaaccctaattgggacaaaagaaagatgaaggtgaagtgttgcgacggcgttgtgtttgagcttgaagatgctttggtgtatgcatcttcgac |
150 |
Q |
| |
|
|||||||||||||||| || || | ||||||||||||||||| ||| || |||||||||||||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
33630196 |
aaggattgaaccctaagtgtgatagaagaaagatgaaggtgaggtgctgtgacggcgttgtgttcgagcttgaagatgctctggtgtattcatcttcgac |
33630295 |
T |
|
| Q |
151 |
tgtcaaaaaattgatagtggaaaatatatctagcagaggatgctttggtggatgcctcttcggcagcgcgcagggtgatagttgtgagatcagttttgct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | | |||||||||||||| | |
|
|
| T |
33630296 |
agtcaaaaaattgatagtggaaaatatatctagcagaggatgctttggtggatgcctcttcggcagcggccagggcgagaatattgagatcagttttgtt |
33630395 |
T |
|
| Q |
251 |
gaagagatatctagcgaaactctgttgaaaatcaatgagtacgtgaagaaacatgcatatgccggagataatgaaaaaagtctccgtagttgggaccttg |
350 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33630396 |
gaagagatatctagtgaaactctgttgaaaatcaatgagtatgtgaagaaacatgcagaagctggagataatgaaaaaagtctccgtaattgggaccttg |
33630495 |
T |
|
| Q |
351 |
agttcatcgaagttgatcgccacacactgtttgcgctagtcttggttagttgtttttnnnnnnnnnnnnnna-tgtcatatttatattcttacatgtaac |
449 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||| |||||||| || |||| ||||| | |||||| ||||||| ||||||||||| |
|
|
| T |
33630496 |
agttcatagaagttgatcgccacgcattgtttgccctagtcttagtaagttatttttgcttttctcatgtcacagtcatacttatatttttacatgtaac |
33630595 |
T |
|
| Q |
450 |
atcatgatgttagtttaattaatttggagttaaaatttgagattctgtttgctatgggaaattta---tgttgagatataatcaatttcctaacttggtt |
546 |
Q |
| |
|
|||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| || |||||||||| |
|
|
| T |
33630596 |
atcaacatgttagtttgattattttggagttaaaatttgagattctgtttgctatgtgaaatttatgttgttgagatagaatcaatatcgtaacttggtt |
33630695 |
T |
|
| Q |
547 |
g |
547 |
Q |
| |
|
| |
|
|
| T |
33630696 |
g |
33630696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 714 - 874
Target Start/End: Original strand, 33630938 - 33631101
Alignment:
| Q |
714 |
gctatataatcactgtaaatatacagagaaaatcaattgaatagaaacattattacc-aattctctgtcatttcaatattctcaac-aaaaaactaataa |
811 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||| |||||||| | ||| |||||| |
|
|
| T |
33630938 |
gctatataatcattgtaaatatacagagaaaatcaattgaatagaattttttttacctaagtctctgtcatttcaattttctcaacgcacaaaataataa |
33631037 |
T |
|
| Q |
812 |
aaacgaccattgaaaattcatagtttggtcataagctacat-aagttaaccagatattgttata |
874 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
33631038 |
aaaagaccattgaaaatgcatagtttggtcataagctaaataaagttaaccagatattgttata |
33631101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 657
Target Start/End: Complemental strand, 26901048 - 26900997
Alignment:
| Q |
606 |
tgtattttattgtgtcagatttaccattcattgtggctgattgtgtcaatga |
657 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
26901048 |
tgtattttattgtgtcagatttatcattcattgtgataaattgtgtcaatga |
26900997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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