View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_10 (Length: 580)
Name: NF20764_low_10
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_10 |
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| [»] scaffold0721 (1 HSPs) |
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| [»] scaffold0394 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Complemental strand, 31437382 - 31436833
Alignment:
| Q |
20 |
ccaaggtcaagtgagactaggctggaagactcagccaagtctgttggaaacgtccatggagcaaggtcattgttgaaactcatggagagtgtttggaggt |
119 |
Q |
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| T |
31437382 |
ccaaggtcaagtgagactaggctggaagactcagccaagtctgttggaaacgtccatggagcaaggtcattgttgaaactcatggagagtgtttggaggt |
31437283 |
T |
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| Q |
120 |
cagtgagtcctttgaagcagccaacaggaactgataagaagttgttttggccaagggaaaccgtttgaagcaaggcgaggttagcgagtgatggtaatgc |
219 |
Q |
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| T |
31437282 |
cagtgagtcctttgaagcagccaacaggaactgataagaagttgttttggccaagggaaaccgtttgaagcaaggcgaggttagcgagtgatggtaatgc |
31437183 |
T |
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| Q |
220 |
gccagaaagagagttggactgaagaaagagggcggtgagttgggagagcgagttgagatcggaaggaagtgttccattgagtgacttggaagaaaggtcg |
319 |
Q |
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| T |
31437182 |
gccagaaagagagttggactgaagaaagagggaggtgagttgggagagcgagttgagatcggaaggaagtgttccattgagtgacttggaagaaaggtcg |
31437083 |
T |
|
| Q |
320 |
atagatgttactcgatgtgcttggtcacattttacaccgttccaggtgcagaagttgctgctagttgaccaacctgacggagtaggactcaaagattttg |
419 |
Q |
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| T |
31437082 |
atagatgttactcggtgtgcttggtcacattttacaccgttccaggtgcagaagttgctgctaattgaccaacctgacggagtaggactcaaagattttg |
31436983 |
T |
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| Q |
420 |
ctagctttgacatgaaagtgccatcgtctccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcacttttgattttgagggagc |
519 |
Q |
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| T |
31436982 |
ctagctttgacatgaaagtgccatcgtctccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcacttttgattttgagggagc |
31436883 |
T |
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| Q |
520 |
catttagatttctttcggaaattgaggaatactagagcagaaagagtattat |
571 |
Q |
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| T |
31436882 |
catttagatttctttcggaaattgagg--taatagagcagaaagagtattat |
31436833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 454
Target Start/End: Complemental strand, 15061542 - 15061284
Alignment:
| Q |
196 |
gaggttagcgagtgatggtaatgcgccagaaagagagttggactgaagaaagagggcggtgagttgggagagcgagttgagatcggaaggaagtgttcca |
295 |
Q |
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| T |
15061542 |
gaggttagcaagtgagggtaatgcaccggaaagagagttggaaaatagaactagggacgtgagtgatgaaagtgagttgagatcagaaggaattgttcca |
15061443 |
T |
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| Q |
296 |
ttgagtgacttggaagaaaggtcgatagatgttactcgatgtgcttggtcacattttacaccgttccaggtgcagaagttgctgctagttgaccaacctg |
395 |
Q |
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| T |
15061442 |
ataagtgacatggaagcaagcttgatagatgttacgctgttaaattcgtcgcatcttacgcctgtccagaggcagaaggatgtgttcgatgaccaacctg |
15061343 |
T |
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| Q |
396 |
acggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
454 |
Q |
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| T |
15061342 |
atggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
15061284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0721 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0721
Description:
Target: scaffold0721; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 6187 - 6256
Alignment:
| Q |
385 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
454 |
Q |
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| T |
6187 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
6256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 2706 - 2775
Alignment:
| Q |
385 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
454 |
Q |
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| T |
2706 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
2775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 38161951 - 38162084
Alignment:
| Q |
170 |
ccaagggaaaccgtttgaagcaaggcgaggttagcgagtgatggtaatgcgccagaaagagagttggactgaagaaagagggcggtgagttgggagagcg |
269 |
Q |
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|||||| ||||||||||||||| || |||||| ||||| || || || ||||| | || |||||||| |||||| | || | ||||| || ||||| | |
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| T |
38161951 |
ccaaggaaaaccgtttgaagcatggtgaggttcgcgagagaaggcaacgcgccggtgagtgagttggattgaagagaaagtgtagtgagctgagagagtg |
38162050 |
T |
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| Q |
270 |
agttgagatcggaaggaagtgttccattgagtga |
303 |
Q |
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| T |
38162051 |
agttcagatcggaaggtaatgttccggtgagtga |
38162084 |
T |
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