View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_low_17 (Length: 472)
Name: NF20764_low_17
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 77 - 454
Target Start/End: Complemental strand, 8274944 - 8274567
Alignment:
| Q |
77 |
tgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaat |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8274944 |
tgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaacgaagttcggccaat |
8274845 |
T |
|
| Q |
177 |
aatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattaca |
276 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8274844 |
aatgcctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactttcactacccacaacccaattaca |
8274745 |
T |
|
| Q |
277 |
cccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgatg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8274744 |
cccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgatg |
8274645 |
T |
|
| Q |
377 |
cttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgcaatcctttcacacc |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8274644 |
cttcttccttcaaatgcacctctatttatagatgtagtgaaccgtgaaagttgcaaagctatgcaatcctttcacacc |
8274567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 76 - 454
Target Start/End: Original strand, 799598 - 799976
Alignment:
| Q |
76 |
ttgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
799598 |
ttgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaacgaagttcggccaa |
799697 |
T |
|
| Q |
176 |
taatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattac |
275 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
799698 |
taatgcctactctccggactgctgcatatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctaactacccacaacccaattac |
799797 |
T |
|
| Q |
276 |
acccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
799798 |
acccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgat |
799897 |
T |
|
| Q |
376 |
gcttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgcaatcctttcacacc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
799898 |
gcttcttccttcaaatgcacctctatttatagatgtagtgaaccgtgaaagttgcaaagctatgcaatcctttcacacc |
799976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 77 - 454
Target Start/End: Original strand, 794844 - 795221
Alignment:
| Q |
77 |
tgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaat |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
794844 |
tgttaggaaactaggcacaatttccccataatcagattaagtggaagtgaaataaatgtggaataataagacacaaaattgttaacgaagttcggccaat |
794943 |
T |
|
| Q |
177 |
aatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattaca |
276 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
794944 |
aatgcctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattaca |
795043 |
T |
|
| Q |
277 |
cccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgatg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
795044 |
cccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgatg |
795143 |
T |
|
| Q |
377 |
cttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgcaatcctttcacacc |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
795144 |
cttcttccttcaaatgcacctctatttatagatgtagtgaaccgtgaaagttgcaaagctatgcaatcctttcacacc |
795221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 76 - 454
Target Start/End: Complemental strand, 8270229 - 8269852
Alignment:
| Q |
76 |
ttgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8270229 |
ttgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcagaataataagacacaaaattgttaacgaagttcggccaa |
8270130 |
T |
|
| Q |
176 |
taatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattac |
275 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270129 |
taatgcctactctccggactgctgcagatctctttaataaaa-gggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattac |
8270031 |
T |
|
| Q |
276 |
acccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8270030 |
acccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgat |
8269931 |
T |
|
| Q |
376 |
gcttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgcaatcctttcacacc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8269930 |
gcttcttccttcaaatgcacctctatttatagatgtagtgaaccgtgaaagttgcaaagctatgcaatcctttcacacc |
8269852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 76 - 454
Target Start/End: Complemental strand, 19941173 - 19940796
Alignment:
| Q |
76 |
ttgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaa |
175 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
19941173 |
ttgttaggaaactaggcacaatttccc-atagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaacgaagtttggccaa |
19941075 |
T |
|
| Q |
176 |
taatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattac |
275 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19941074 |
taatgcctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattac |
19940975 |
T |
|
| Q |
276 |
acccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19940974 |
acccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgat |
19940875 |
T |
|
| Q |
376 |
gcttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgcaatcctttcacacc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19940874 |
gcttcttccttcaaatgcacctctatttatagatgtagtgaaccgtgaaagttgcaaagctatgcaatcctttcacacc |
19940796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 77 - 454
Target Start/End: Complemental strand, 19945926 - 19945550
Alignment:
| Q |
77 |
tgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaat |
176 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
19945926 |
tgttaggaaactaggcacaatttccc-atagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaacgaagtttggccaat |
19945828 |
T |
|
| Q |
177 |
aatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattaca |
276 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19945827 |
aatgcctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattaca |
19945728 |
T |
|
| Q |
277 |
cccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgatg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19945727 |
cccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgatg |
19945628 |
T |
|
| Q |
377 |
cttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgcaatcctttcacacc |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19945627 |
cttcttccttcaaatgcacctctatttatagatgtagtgaaccgtgaaagttgcaaagctatgcaatcctttcacacc |
19945550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 76 - 441
Target Start/End: Complemental strand, 42839465 - 42839118
Alignment:
| Q |
76 |
ttgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaa |
175 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
42839465 |
ttgttaggaaactacgcaaaatttacccatagtcaaattaagtggaagtgaaataaatgcggaataataacacacaaagttgttaacgaagttcggccaa |
42839366 |
T |
|
| Q |
176 |
taatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattac |
275 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| | |
|
|
| T |
42839365 |
taatacctactct--------ctgcagatctctttaataaaaagggaaatatacgtgtttacaaacactcacaatctctcact------------attgc |
42839286 |
T |
|
| Q |
276 |
acccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcactt--gtgttgttgttgtgtttttgcttctg |
373 |
Q |
| |
|
|| || ||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||||| | |
|
|
| T |
42839285 |
actaaatttttttctctaaaattctctgagtgcgtttttctctaactctctattgatgtaattcactcactttacttatgttgctgtgtttttgcttccg |
42839186 |
T |
|
| Q |
374 |
atgcttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgca |
441 |
Q |
| |
|
|||| ||||| ||||||||||| ||| |||||||| | | |||| ||| ||||| ||||||||||| |
|
|
| T |
42839185 |
atgcatcttctttcaaatgcacttctctttatagaggcaatgaaacatgagagttggaaagctatgca |
42839118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 7739971 - 7739816
Alignment:
| Q |
77 |
tgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaat |
176 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||| ||||| ||||||| ||||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
7739971 |
tgttatgaaactatgcaagatttgtccatagtcaaattaaatggaagttaaataaatgcggaatgatag--------attgttaacgaagttcggccaat |
7739880 |
T |
|
| Q |
177 |
aatacctactctccggactgctgcagatctctttaataaaaa-gggaaatatatgtgtttacaa |
239 |
Q |
| |
|
||| | |||||| | ||||||| |||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
7739879 |
aatgtcaactctctccattgctgcacatctctttaataaaaaagggagatatatgtgtttacaa |
7739816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 77 - 454
Target Start/End: Complemental strand, 6693977 - 6693600
Alignment:
| Q |
77 |
tgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaat |
176 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6693977 |
tgttaggaaactaggcacaatatttccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaacgaagttcggccaat |
6693878 |
T |
|
| Q |
177 |
aatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattaca |
276 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6693877 |
aatgcctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattaca |
6693778 |
T |
|
| Q |
277 |
cccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgatg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6693777 |
cccaagaattttctctaaaattctcacactgagtttttcccttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgatg |
6693678 |
T |
|
| Q |
377 |
cttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgcaatcctttcacacc |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6693677 |
cttcttccttcaaatgcacctctatttatagatgtagtgaaccgtgaaagttgcaaagctatgcaatcctctcacacc |
6693600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 76 - 450
Target Start/End: Complemental strand, 6689228 - 6688864
Alignment:
| Q |
76 |
ttgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaa |
175 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6689228 |
ttgttaggaaactatgcacaatattcccatagtcagattaagtggaagagaaataaatgcggaataataagacacaaaattgttaacgaagttcggccaa |
6689129 |
T |
|
| Q |
176 |
taatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattac |
275 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
6689128 |
taatgcctactctccgaactgctgcaaatctctttaataaaaagggaaatatatgtttttacaaac----------tctcactacccacaacccaattac |
6689039 |
T |
|
| Q |
276 |
acccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6689038 |
acccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgat |
6688939 |
T |
|
| Q |
376 |
gcttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgcaatcctttca |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6688938 |
gcttcttccttcaaatgcacctctatttatagatgtagtgaaccgtgaaagttgcaaagctatgcaatcctttca |
6688864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 33756767 - 33756592
Alignment:
| Q |
79 |
ttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaataa |
178 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
33756767 |
ttaggaaactatgcaaaatttccccatagtcagattaaatggaagtgaaataaatgcgaaataataacacacaaaattcttaacgaagttcggccaataa |
33756668 |
T |
|
| Q |
179 |
tacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactct |
254 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
33756667 |
tacctactctctggactgctgcagatctctttaataaaaagggaaatatacgtgtttacaatcactcacaatctct |
33756592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 121 - 375
Target Start/End: Complemental strand, 27222270 - 27222028
Alignment:
| Q |
121 |
aagtgaaataaatgcggaataata--agacacaaaattgttaatgaagttcggccaataatacctactctccggactgctgcagatctctttaataaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| ||| |||||||| ||||| || |||||| |||| | | ||||| ||| |||| |
|
|
| T |
27222270 |
aagtgaaataaatgcggaataatagcacacacaaaattgataacgaagttcgaccaattatgcctact---------gctgaaaa-ctcttcaattaaaa |
27222181 |
T |
|
| Q |
219 |
gggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattacacccaagaattttctct-aaaattctcacactgagtttttctc |
317 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||||| | | ||||||||||| |
|
|
| T |
27222180 |
gggaaatatatgtgtttataaacactcgcaatctcttactacccacaactcaattacacccaagaattttctctaaaaattctctctc-gagtttttctc |
27222082 |
T |
|
| Q |
318 |
ttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgat |
375 |
Q |
| |
|
| ||||||| |||||||||| |||| | ||| | |||||||||||||||||||||| |
|
|
| T |
27222081 |
taactctctgttgatgtaatacact-agttg---tattgttgtgtttttgcttctgat |
27222028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 31760829 - 31760706
Alignment:
| Q |
103 |
catagtcagattaagtggaagtgaaataaatgcggaataa--taagacacaaaattgttaatgaagttcggccaataatacctactctccggactgctgc |
200 |
Q |
| |
|
|||||| | ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||| ||||||| | | | |||| |
|
|
| T |
31760829 |
catagttaaattaagtggaagtaaaataaatgcggaataacataagacacaaatttgttaacgaagttcagccaataatatctactcttcaaaatactgc |
31760730 |
T |
|
| Q |
201 |
agatctctttaataaaaagggaaa |
224 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
31760729 |
aaatctctttaataaaaagggaaa |
31760706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 338
Target Start/End: Original strand, 9432073 - 9432182
Alignment:
| Q |
229 |
tgtgtttacaaacactcacaaactctcactacccacaacccaattacacccaagaattttctctaaaattctcacactgagtttttctcttactctctat |
328 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||| |||| |||||||| | ||| ||||| | | ||||| ||| ||||||| ||| | ||| ||| |
|
|
| T |
9432073 |
tgtgtttacaaacactcacaatctttcattacccaaaacctaattacactcgagatttttccttgagtttctcttactcagtttttatctaattctatat |
9432172 |
T |
|
| Q |
329 |
tgatgtaatt |
338 |
Q |
| |
|
|||||||||| |
|
|
| T |
9432173 |
tgatgtaatt |
9432182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 77 - 454
Target Start/End: Complemental strand, 26199933 - 26199570
Alignment:
| Q |
77 |
tgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaat |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26199933 |
tgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaacgaagttcggcc--- |
26199837 |
T |
|
| Q |
177 |
aatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattaca |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26199836 |
------tactctccggactgctgcagatctctttaataaaaagggaaatat--gtgtttacaaacactcacaaactctcactacccacaacccaattaca |
26199745 |
T |
|
| Q |
277 |
cccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttgcttctgatg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26199744 |
cccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttg---ttgtgtttttgcttctgatg |
26199648 |
T |
|
| Q |
377 |
cttcttccttcaaatgcacctctatttatagatgtagtgaactgtgaaagttgcaaagctatgcaatcctttcacacc |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26199647 |
cttcttccttcaaatgcacctctatttatagatgtagtgaaccgtgaaagttgcaaagctatgcaatcctttcacacc |
26199570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 6065941 - 6065852
Alignment:
| Q |
236 |
acaaacactcacaaactctcactacccacaacccaattacacccaagaattttctctaaaattctcacactgagtttttctcttactctc |
325 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||||| | |||||||||||||||||||||| || ||||||||||||| |||||| |
|
|
| T |
6065941 |
acaaacactcacaatctctcgctacccgcaacccaattacatcgaagaattttctctaaaattctctcaatgagtttttctctaactctc |
6065852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 75 - 377
Target Start/End: Original strand, 31178255 - 31178549
Alignment:
| Q |
75 |
tttgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataaga---cacaaaattgttaatgaagttcgg |
171 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
31178255 |
tttgttaggaaactacgcaaaatttccccattgtcagat-aagtggaagtaaaataaatgcggaataataataacacacaaaattgttaacgaagttcgg |
31178353 |
T |
|
| Q |
172 |
ccaataatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaa |
271 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
31178354 |
ccaataatgcctactctccggactgttgcagatctctttaataaaaagggaaatata--tgtttagaaacactcacaaactct-------cacaatccaa |
31178444 |
T |
|
| Q |
272 |
ttacacccaagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcactt--gtgttgttgttgtgtttttgct |
369 |
Q |
| |
|
||||||| |||||||||||||||||||| | |||||||||||||||| | ||||||||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
31178445 |
ttacacctaagaattttctctaaaattccctcactgagtttttctctaa--ctctattgatgtaattcactcactttacttgtgttgttgtg-ttttgct |
31178541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 116 - 367
Target Start/End: Original strand, 11400392 - 11400639
Alignment:
| Q |
116 |
agtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaataatacctactctccggactgctgcagatctctttaataa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |||| || ||||| | | | || || || ||||||||||| |
|
|
| T |
11400392 |
agtggaagtgaaataaatgcggaataataacacacaaa-ttgttaacgaagttcggtcaattatgtctactatgcaggctactaaagtcctctttaataa |
11400490 |
T |
|
| Q |
216 |
aaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattacacccaagaattttctctaaaattctcacactgagtttttc |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||| | |||||||||||||| ||| | |||||| |
|
|
| T |
11400491 |
aaaggggaatatatgtgtttacaaacactcaaaatctctcactatccacaatccaattacacccaagaactgtctctaaaattctctaacttaatttttc |
11400590 |
T |
|
| Q |
316 |
tcttactctctattgatgtaattcactcacttgtgttgttgttgtgtttttg |
367 |
Q |
| |
|
||| | |||| |||||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
11400591 |
tctaa--ctctgttgatgtaattcactctcttgacttg-tgttgtgtttttg |
11400639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 76 - 275
Target Start/End: Original strand, 11891393 - 11891591
Alignment:
| Q |
76 |
ttgttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaa |
175 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||||||| |||| |
|
|
| T |
11891393 |
ttgttaggaaactacgcaaaatttcctcatagtcagattaagtggaagtgaaataaatgcagaataataacacaaaaaattgttagcgaagttcgtccaa |
11891492 |
T |
|
| Q |
176 |
taatacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattac |
275 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
11891493 |
taatacctactctctggactgttgcagatctctttaataaaatggg-aatatatgtatttacaaacactcacaatctcttactacccataacccaattac |
11891591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 79 - 360
Target Start/End: Original strand, 11906374 - 11906651
Alignment:
| Q |
79 |
ttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaataa |
178 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11906374 |
ttaggaaactacgcaaaatttccccatagtcagattaagtggaagtgaaa---atgcggaataataacacacaaaattgttaatgaagttcggccaataa |
11906470 |
T |
|
| Q |
179 |
tacctactctccggactgctgcagatctctttaataaaaagggaaatatatgtgtttacaaacactcacaaactctcactacccacaacccaattacacc |
278 |
Q |
| |
|
| || | ||||| |||||||| | |||| | |||||||| ||||||||||||| |||||||||||||||||||| |||| | |||||| ||||||||| |
|
|
| T |
11906471 |
tgccaaatctccagactgctggatatctttataataaaaggggaaatatatgtatttacaaacactcacaaactttcaccgctcacaacaaaattacacc |
11906570 |
T |
|
| Q |
279 |
caagaattttctctaaaattctcacactgagtttttctcttactctctattgatgtaattcactcacttgtgttgttgttgt |
360 |
Q |
| |
|
||| || |||| ||||||||| | ||| ||||| ||| |||||||| ||||||||| |||| |||||||||||| |||| |
|
|
| T |
11906571 |
caaaaaaattctttaaaattctatctttgaatttttttctaactctctactgatgtaatacact-acttgtgttgtttttgt |
11906651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 42177072 - 42176900
Alignment:
| Q |
79 |
ttaggaaactaggcacaatttccccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaataa |
178 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
42177072 |
ttaggaaactacgcacaatttcctcatagtcagattaagtggaagtgaaataaatatgaaataataagacacaaaattattaacgaagttcggccaataa |
42176973 |
T |
|
| Q |
179 |
tacctactctccggactgctgcagatctctttaa-taaaaagggaaatatatgtgtttacaaacactcacaaa |
250 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42176972 |
tgcctactctccgaactgctgcagatctctttaattaaaaagagaaatatatgtgtttacaaacactcacaaa |
42176900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 102 - 246
Target Start/End: Complemental strand, 37569044 - 37568898
Alignment:
| Q |
102 |
ccatagtcagattaagtggaagtgaaataaatgcggaataata--agacacaaaattgttaatgaagttcggccaataatacctactctccggactgctg |
199 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||| ||||| || |
|
|
| T |
37569044 |
ccatagtcaaattaaatggaagtgaaataaatgcggaataatagcacacacaaaattgttaatgaaattcggccaataatgcctactctatggactaatg |
37568945 |
T |
|
| Q |
200 |
cagatctctttaataaaaagggaaatatatgtgtttacaaacactca |
246 |
Q |
| |
|
|| |||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
37568944 |
caaatctttttaataaacgggagaatatatgtgtttacaaacactca |
37568898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 31582832 - 31582909
Alignment:
| Q |
102 |
ccatagtcagattaagtggaagtgaaataaatgcggaataataagacacaaaattgttaatgaagttcggccaataat |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
31582832 |
ccatagtcagattaagtggaagtgaaataaatatggaataataacacacaaaattgttaatgaagttcggtcaataat |
31582909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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