View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_19 (Length: 455)
Name: NF20764_low_19
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 35278589 - 35278160
Alignment:
| Q |
8 |
cgaagaatatttggtgacaaaagaaaaagtgaaaagga---attctatacactatttgagacaaacaatatatggggtcatgtcgtgcagtgagtgaaac |
104 |
Q |
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| T |
35278589 |
cgaaaaatatttggtgacaaaagaaaaagtgaaaaggattaattctatacactatttgagacaaacaatatatggggtcatgtcgtgcagtgagtgaaac |
35278490 |
T |
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| Q |
105 |
aaactttcatgcgtataggaagtgcacgagtggtgggtgagctgagctggttgcaatttgcattttgtcttagtctaaagtttt-attggctgcaaaata |
203 |
Q |
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| T |
35278489 |
aaactttcatgcgtataggaagtgcacgagtggtgggtgagctg-----gttgcaatttgcattttgtcttagtctaaagtttttattggctgcaaaata |
35278395 |
T |
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| Q |
204 |
aagttccattatccnnnnnnnnnnnnnnnnnnnnnnnnnggttcctatttcatagatatgaagtttacctgtgcttaatggtgtcaaagaattcaaattt |
303 |
Q |
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| T |
35278394 |
aagttccattatcctttttattttaagtgttttttatttggttcctatgtcatagatatgaagtttacctatgcttaatggtgtcaaagaattcaaattt |
35278295 |
T |
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| Q |
304 |
aagctttatttatatattgatt-atgagtataatattagttgatttaaagcatataatttgtgatgacaaagttgatttgattagagtaatactaattac |
402 |
Q |
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| T |
35278294 |
aagctt-atttatatattgatttatgagtataatattagttgatttaaagcatataatttgtgatgacaaagttgatttgattagagtaatactaattac |
35278196 |
T |
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| Q |
403 |
attaactctgatataagatgtctctatacacaaatg |
438 |
Q |
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| T |
35278195 |
attaactctgatataagatgtctctataaacaaatg |
35278160 |
T |
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