View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_21 (Length: 441)
Name: NF20764_low_21
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_21 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 29029095 - 29029418
Alignment:
| Q |
1 |
aaagagttgcaaataattcatagaagatatatacatgttgatgccttggaccttcccatgatgtaattataatctaattaagcaaaatccacaca--acc |
98 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
29029095 |
aaagagttgcaaataattcatagaaaata----catgttgatgccttggaccttcccatgatgtaattataatctaattaagcaaaaaccacacacaacc |
29029190 |
T |
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| Q |
99 |
nnnnnnnttaagcatgagaccacacaagtgaaaaccatagtgacactctc--agctgtttcggagaaaccaacatacaaagatacacatacatcgttaat |
196 |
Q |
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| T |
29029191 |
aaaaaaattaagcatgagaccacacaagtgaaaaccatagtgacactctctcagctgcctcggagaaaccaacatacaaaaatacacatacatcgttaat |
29029290 |
T |
|
| Q |
197 |
taaatcttaaacgtgacaatgtatttgattcaaatttaaaccaaatatatgtatttttgttgcttatatttaagatcagatgaagtaattaaaatccaca |
296 |
Q |
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| T |
29029291 |
tagatcttaagtatggaaatgtatttgatccaaatttaaactaaatatatgtatttttgttgcttatatttaggatcagatgaagtaattaaaatccaca |
29029390 |
T |
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| Q |
297 |
taaaaatttctaaggggggaataaatgat |
325 |
Q |
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| T |
29029391 |
taaaaacttc-aaggggggaataaatgat |
29029418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 29029447 - 29029505
Alignment:
| Q |
326 |
gtatatgagagaatatatgagaaattggttt---gacatactctactttttcagctttc |
381 |
Q |
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| T |
29029447 |
gtatatgagagaatatatgagaaattggattgacgacatactctactttttcagctttc |
29029505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 169 - 325
Target Start/End: Original strand, 36070134 - 36070285
Alignment:
| Q |
169 |
catacaaagatacacatacatcgttaattaaatcttaaacgtgacaatgtatttgattcaaatttaaaccaaatatatgtatttttgttgcttatattta |
268 |
Q |
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| T |
36070134 |
catacaaagatacacatacatccttat----atcttaagtatggcaatgtatttgatccaaatttaggccaaatatatgtattttt-ttgcttatattta |
36070228 |
T |
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| Q |
269 |
agatcagatgaagtaattaaaatccacataaaaatttctaaggggggaataaatgat |
325 |
Q |
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| T |
36070229 |
taatgagatggagtaattaaaatccacataaaaatttaaaggggggaaataaatgat |
36070285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 36070024 - 36070106
Alignment:
| Q |
1 |
aaagagttgcaaataattcatagaagatatatacatgttgatgccttggaccttcccatgatgtaattataatctaattaagcaaaa |
87 |
Q |
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| T |
36070024 |
aaagatttgcaaataattcatata----aaatacatgttgatgccttggaccttgctatgaagtaattataatctaattaagcaaaa |
36070106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 322
Target Start/End: Complemental strand, 27589615 - 27589409
Alignment:
| Q |
106 |
ttaagcatgagaccacacaagtgaaaaccatagtgacactctcagctgtttcggagaaaccaacatacaaa-gatacacatacatcgttaattaaatctt |
204 |
Q |
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| T |
27589615 |
ttaagcatgatatcacgcaaatgaaaaccatagtgatactctcagctgcctcgaagaaac-aacatacaaaagatacaaatacatc----attagatctt |
27589521 |
T |
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| Q |
205 |
aaacgtgacaatgtatttgattcaaatttaaaccaaatatatgtatttttgttgcttatatttaagatcagatgaagtaattaaaatccacataaaaatt |
304 |
Q |
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| T |
27589520 |
aaatatgcacatgca----atccaaatttataccaaatacatgtactttattttcttat-tttaagatcaaagggagcaattaaaatccgcataaaaatt |
27589426 |
T |
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| Q |
305 |
tctaaggggggaataaat |
322 |
Q |
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| T |
27589425 |
tc-aaggggggaataaat |
27589409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 142179 - 142208
Alignment:
| Q |
214 |
aatgtatttgattcaaatttaaaccaaata |
243 |
Q |
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| T |
142179 |
aatgtatttgattcaaatttaaaccaaata |
142208 |
T |
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