View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_low_22 (Length: 436)

Name: NF20764_low_22
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_low_22
NF20764_low_22
[»] chr4 (4 HSPs)
chr4 (18-418)||(2871424-2871822)
chr4 (238-313)||(12276851-12276926)
chr4 (236-326)||(4423167-4423257)
chr4 (236-280)||(55827305-55827349)
[»] chr5 (11 HSPs)
chr5 (236-327)||(39030580-39030671)
chr5 (236-342)||(34252719-34252825)
chr5 (360-410)||(449072-449122)
chr5 (236-342)||(33669929-33670035)
chr5 (240-345)||(2424444-2424549)
chr5 (240-345)||(39030569-39030674)
chr5 (239-343)||(25467111-25467215)
chr5 (239-292)||(12619671-12619724)
chr5 (262-314)||(27080980-27081032)
chr5 (236-280)||(34252719-34252763)
chr5 (238-310)||(38958065-38958137)
[»] chr1 (5 HSPs)
chr1 (236-327)||(3739816-3739907)
chr1 (240-343)||(29855059-29855162)
chr1 (238-302)||(26265783-26265847)
chr1 (240-342)||(3739816-3739918)
chr1 (236-302)||(27527707-27527773)
[»] chr2 (9 HSPs)
chr2 (236-342)||(31469073-31469179)
chr2 (236-340)||(43042170-43042274)
chr2 (236-280)||(10459268-10459312)
chr2 (236-280)||(31469073-31469117)
chr2 (265-308)||(16561042-16561085)
chr2 (236-345)||(16180437-16180546)
chr2 (239-311)||(944776-944848)
chr2 (239-327)||(944788-944876)
chr2 (236-280)||(38935365-38935409)
[»] chr7 (5 HSPs)
chr7 (236-327)||(18731992-18732083)
chr7 (244-345)||(16866400-16866501)
chr7 (236-327)||(16866403-16866494)
chr7 (236-311)||(5026142-5026217)
chr7 (236-302)||(6803309-6803375)
[»] chr6 (2 HSPs)
chr6 (236-341)||(31323817-31323922)
chr6 (237-342)||(31323817-31323922)
[»] chr8 (2 HSPs)
chr8 (236-292)||(11114288-11114344)
chr8 (262-315)||(8587208-8587261)
[»] chr3 (3 HSPs)
chr3 (236-340)||(26914452-26914555)
chr3 (258-313)||(49687905-49687960)
chr3 (240-280)||(46829106-46829146)
[»] scaffold0650 (1 HSPs)
scaffold0650 (262-313)||(26-77)
[»] scaffold0027 (1 HSPs)
scaffold0027 (267-345)||(13173-13251)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 2871822 - 2871424
Alignment:
Q  18 gtcgaagtattccctcgtaaactactacttgctttgtataaatcacttccatccattgctccaaccaaaagtcttcctttttcttcaaagaatggtgcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2871822 gtcgaagtattccctcgtaaactactacttgctttgtataaatcacttccatccattgctacaaccaaaagtcttcctttttcttcaaagaatggtgcta 2871723  T
Q  118 atagcaacaatcttcaaaatcaatgaacttttacttgtgatagtgctttgtttgtatagctttcttataatgagagagtgtagagaggacatagcctatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  2871722 atagcaacaatcttcaaaatcaatgaacttttacttgtgatagtgctttgtttgtatagctttcttataatgagag--tgtagagaggacatagcctatt 2871625  T
Q  218 tatgagcttcgcatttactcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatag 317  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2871624 tatgagcttcacatttactcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatag 2871525  T
Q  318 atcaattttttgttacattttgggatgggggagcacttatctcacacaaattaaagaaaaactataaaagaaagaaggagaataacatttttaatatatt 417  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2871524 ataaattttttgttatattttgggatgggggagcacttatctcacacaaattaaagaaaaactataaaagaaagaaggagaataacatttttaatagatt 2871425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 12276926 - 12276851
Alignment:
Q  238 ccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaactttt 313  Q
    ||||||||||||||||||| ||| |||| |||||||||||||| |||||||||||  | |||||| || |||||||    
T  12276926 ccaaaatataagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaactttt 12276851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 4423257 - 4423167
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaatttt 326  Q
    ||||||||| ||||||||||| | | || | |||||||||||||| ||| |||||||  | |||||| || || |||||| ||||||||||    
T  4423257 tcccaaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaatcaaatatattaatttttattgatcaatttt 4423167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 55827349 - 55827305
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattt 280  Q
    ||||||||||||||||||||| ||| |||||||||| || |||||    
T  55827349 tcccaaaatataagcaaaaattggtcaacaaaagttaatatattt 55827305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 39030671 - 39030580
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttt 327  Q
    |||||||||||||||||||||  || |||||||||| |||||||| ||| |||||||| |||||||| || ||||||| | || ||||||||    
T  39030671 tcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaattttt 39030580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 34252825 - 34252719
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacat 335  Q
    ||||||||| ||||||||||| ||| |||| ||||||||| || | | |||||||||  |||||||| || ||||||| | || ||||||||  ||||||    
T  34252825 tcccaaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgttgaccaatttttgcttacat 34252726  T
Q  336 tttggga 342  Q
    |||||||    
T  34252725 tttggga 34252719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 449122 - 449072
Alignment:
Q  360 cacacaaattaaagaaaaactataaaagaaagaaggagaataacattttta 410  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||| |||||    
T  449122 cacacaaattaaggaaaatctataaatgaaagaaggagaataacaatttta 449072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 33669929 - 33670035
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacat 335  Q
    ||||||||| ||||||||||| ||| |||| |||||  ||||| | ||| |||||||  |||||||| || ||||||| | || ||||||||  ||||||    
T  33669929 tcccaaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgcttacat 33670028  T
Q  336 tttggga 342  Q
    |||||||    
T  33670029 tttggga 33670035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 345
Target Start/End: Original strand, 2424444 - 2424549
Alignment:
Q  240 aaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacattttg 339  Q
    |||||||||||||||||  || |||| ||| |||||||| | ||| |||||||  |||||||| || ||||||||| || ||||||||  ||| | ||||    
T  2424444 aaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaacttttatcgaccaatttttgtttataatttg 2424543  T
Q  340 ggatgg 345  Q
    ||||||    
T  2424544 ggatgg 2424549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 345
Target Start/End: Original strand, 39030569 - 39030674
Alignment:
Q  240 aaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacattttg 339  Q
    ||||||||||||||||| ||| |||||||||| |||||||| ||  ||| |||  |||||||| || ||||||| | ||  |||||||  ||| ||||||    
T  39030569 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttg 39030668  T
Q  340 ggatgg 345  Q
    ||||||    
T  39030669 ggatgg 39030674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 25467111 - 25467215
Alignment:
Q  239 caaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacatttt 338  Q
    |||||| ||||||||||| | | |||| ||||||||||||    ||||||||||  |||| ||| || ||||||||| |||||||||||  ||| |||||    
T  25467111 caaaatgtaagcaaaaatggattaacataagttgatgtatccgatataaattttgaaccacatacattaacttttatcgatcaatttttccttagatttt 25467210  T
Q  339 gggat 343  Q
    |||||    
T  25467211 gggat 25467215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 12619724 - 12619671
Alignment:
Q  239 caaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttt 292  Q
    |||||||||||||||||| | | |||| ||||||||||||||  ||||||||||    
T  12619724 caaaatataagcaaaaatggatcaacataagttgatgtatttgatataaatttt 12619671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 27081032 - 27080980
Alignment:
Q  262 aacaaaagttgatgtattttgtataaatttttgaccaaataaatcaactttta 314  Q
    |||||||||||||||||||  | ||||||||| | ||||||||||| ||||||    
T  27081032 aacaaaagttgatgtatttaatctaaatttttaatcaaataaatcatctttta 27080980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 34252719 - 34252763
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattt 280  Q
    ||||||||| ||||||||||| ||| |||||||||| ||||||||    
T  34252719 tcccaaaatgtaagcaaaaattggtcaacaaaagttaatgtattt 34252763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 38958065 - 38958137
Alignment:
Q  238 ccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaact 310  Q
    |||||||||||| |||||| | | |||||||||| |||||||| ||  |||||||  |||||||| |||||||    
T  38958065 ccaaaatataagtaaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaatacatcaact 38958137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 3739816 - 3739907
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttt 327  Q
    ||||||||||||||||||||| ||| ||| |||||| |||||||| ||| |||||||| |||||||| || ||||||| | || ||||||||    
T  3739816 tcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaattttt 3739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 343
Target Start/End: Complemental strand, 29855162 - 29855059
Alignment:
Q  240 aaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacattttg 339  Q
    ||||||||||||||||| | | |||||||||| |||||||| ||| |||||||| |||||||| |||||||||| | ||| ||||||   ||| ||||||    
T  29855162 aaaatataagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttg 29855063  T
Q  340 ggat 343  Q
    ||||    
T  29855062 ggat 29855059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 26265783 - 26265847
Alignment:
Q  238 ccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaata 302  Q
    ||||||| |||||||||||  || |||| |||||||||||||| |||||||||||  ||||||||    
T  26265783 ccaaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaata 26265847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 342
Target Start/End: Complemental strand, 3739918 - 3739816
Alignment:
Q  240 aaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacattttg 339  Q
    ||||||||||||||||| ||| |||||||||| |||||||| ||  ||| |||  |||||||| || ||||||  | || ||||||||  ||| ||||||    
T  3739918 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttg 3739819  T
Q  340 gga 342  Q
    |||    
T  3739818 gga 3739816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 27527707 - 27527773
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaata 302  Q
    |||||||||||||  |||||| |||||| | |||||||||||| | |||||||||||  ||||||||    
T  27527707 tcccaaaatataaataaaaatgggtaaatataagttgatgtatctggtataaattttgaaccaaata 27527773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 31469179 - 31469073
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacat 335  Q
    ||||||||||||||||||||| ||| ||| |||||| ||||||||  || |||||||| |||||||| || ||||||| | || ||||||||  ||| ||    
T  31469179 tcccaaaatataagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatat 31469080  T
Q  336 tttggga 342  Q
    |||||||    
T  31469079 tttggga 31469073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 340
Target Start/End: Complemental strand, 43042274 - 43042170
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacat 335  Q
    ||||||||| |||||||||||  |||||||||||||||||||| |  ||||||||||  ||| |||| || || |||| | |||| ||||||  ||||||    
T  43042274 tcccaaaatgtaagcaaaaatgagtaaacaaaagttgatgtatctgatataaattttgaaccgaatacattaaattttgttgatcgatttttacttacat 43042175  T
Q  336 tttgg 340  Q
    |||||    
T  43042174 tttgg 43042170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 10459268 - 10459312
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattt 280  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||||    
T  10459268 tcccaaaatataagcaaaaattggtcaacaaaagttaatgtattt 10459312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 31469073 - 31469117
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattt 280  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||||    
T  31469073 tcccaaaatataagcaaaaattggtcaacaaaagttaatgtattt 31469117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 308
Target Start/End: Original strand, 16561042 - 16561085
Alignment:
Q  265 aaaagttgatgtattttgtataaatttttgaccaaataaatcaa 308  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||    
T  16561042 aaaagttgatgtattttgtttaaaatttagaccaaataaatcaa 16561085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 16180437 - 16180546
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacat 335  Q
    ||||||||| |||||||||||  || |||| || ||||||||||   ||||||||||  |||||||| || ||||||| | || ||| ||||  ||| ||    
T  16180437 tcccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgaccaaattttacttatat 16180536  T
Q  336 tttgggatgg 345  Q
    ||||||||||    
T  16180537 tttgggatgg 16180546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 944776 - 944848
Alignment:
Q  239 caaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaactt 311  Q
    |||||||||||||||||||| | || ||||||| |||||||| ||  ||| |||  |||||||| ||||||||    
T  944776 caaaatataagcaaaaatcgatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaactt 944848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 944876 - 944788
Alignment:
Q  239 caaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttt 327  Q
    |||||| |||| ||||||  || |||| |||||||||||||| ||| |||||||  || ||||| || ||||||||| |||| ||||||    
T  944876 caaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaacttttattgatcgattttt 944788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 38935365 - 38935409
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattt 280  Q
    |||||||||||||||||||||  || |||| ||||||||||||||    
T  38935365 tcccaaaatataagcaaaaatgagtcaacataagttgatgtattt 38935409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 18731992 - 18732083
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttt 327  Q
    ||||||||||||||||||||| | | |||| || ||||||||| | |||||||||||  |||||||| || ||||||||| || ||||||||    
T  18731992 tcccaaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaattttt 18732083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 16866501 - 16866400
Alignment:
Q  244 tataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacattttgggat 343  Q
    ||||||||||||| ||| |||||||||| |||||||| ||  ||| |||  ||| |||| || ||||||||| |||||||||||  ||| ||||||||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttgggat 16866402  T
Q  344 gg 345  Q
    ||    
T  16866401 gg 16866400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 16866403 - 16866494
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttt 327  Q
    ||||||||||||||||||||| | | || ||||||| |||||||  ||| |||||||| |||||||| || ||||||| | || ||||||||    
T  16866403 tcccaaaatataagcaaaaattgatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttgaccaattttt 16866494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 5026142 - 5026217
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaactt 311  Q
    ||||||||||||||||||||| ||| |||||||||| || ||||| ||  ||| |||  |||||||| ||||||||    
T  5026142 tcccaaaatataagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacatcaactt 5026217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 6803309 - 6803375
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaata 302  Q
    ||||||||||||||||||| | ||| |||||||||| |||||||| || |||| |||  ||||||||    
T  6803309 tcccaaaatataagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaata 6803375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 341
Target Start/End: Complemental strand, 31323922 - 31323817
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacat 335  Q
    ||||||||| ||||||||||| ||| |||| |||||||||||| | ||| |||||||  || ||||| || ||||||| | || ||||||||  ||||||    
T  31323922 tcccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacat 31323823  T
Q  336 tttggg 341  Q
    ||||||    
T  31323822 tttggg 31323817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 342
Target Start/End: Original strand, 31323817 - 31323922
Alignment:
Q  237 cccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacatt 336  Q
    |||||||| ||||||||||| ||| |||||||||| |||||||||||  ||| |||  |||| ||| |||||||| | | || | ||||||  |||||||    
T  31323817 cccaaaatgtaagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacatt 31323916  T
Q  337 ttggga 342  Q
    ||||||    
T  31323917 ttggga 31323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 11114344 - 11114288
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttt 292  Q
    |||||||||||||| |||||| | | |||| |||||||||||||| |||||||||||    
T  11114344 tcccaaaatataagtaaaaattgatcaacataagttgatgtatttggtataaatttt 11114288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 8587208 - 8587261
Alignment:
Q  262 aacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttat 315  Q
    |||||||||||||||||||||  ||||||||| || | ||| ||||||||||||    
T  8587208 aacaaaagttgatgtattttgactaaatttttaactagatacatcaacttttat 8587261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 26914452 - 26914555
Alignment:
Q  236 tcccaaaatataagcaaaaatcggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacat 335  Q
    ||||||||| ||||||||||| ||  |||  |||||||||||||| |||||||||||  |||| ||| || || |||| | |||||||||||  ||||||    
T  26914452 tcccaaaatgtaagcaaaaat-ggacaacttaagttgatgtatttagtataaattttgaaccacatacattaatttttgttgatcaatttttgcttacat 26914550  T
Q  336 tttgg 340  Q
    |||||    
T  26914551 tttgg 26914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 49687905 - 49687960
Alignment:
Q  258 ggtaaacaaaagttgatgtattttgtataaatttttgaccaaataaatcaactttt 313  Q
    |||||||||||||||||||||||| | ||||||||  || | ||||||||||||||    
T  49687905 ggtaaacaaaagttgatgtattttatctaaattttaaactagataaatcaactttt 49687960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 46829146 - 46829106
Alignment:
Q  240 aaaatataagcaaaaatcggtaaacaaaagttgatgtattt 280  Q
    ||||||||||||||||| ||| |||||||||| ||||||||    
T  46829146 aaaatataagcaaaaattggtcaacaaaagttaatgtattt 46829106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 77 - 26
Alignment:
Q  262 aacaaaagttgatgtattttgtataaatttttgaccaaataaatcaactttt 313  Q
    ||||||||||||||||||| |  ||||||||| |||||||| ||||||||||    
T  77 aacaaaagttgatgtatttggactaaatttttaaccaaatacatcaactttt 26  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 13251 - 13173
Alignment:
Q  267 aagttgatgtattttgtataaatttttgaccaaataaatcaacttttatagatcaattttttgttacattttgggatgg 345  Q
    |||||||||||| ||||| |||||||  |||||||| || ||||||| | |||| ||||||  ||||||||||| ||||    
T  13251 aagttgatgtatcttgtacaaattttaaaccaaatacattaacttttgttgatccatttttgcttacattttggaatgg 13173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University