View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_25 (Length: 427)
Name: NF20764_low_25
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 812914 - 812505
Alignment:
| Q |
1 |
ttttatccctttccccctt-atgaaactatttaatggggtggtgcggttgtgtagagattgtttataattgactttcttagtaattcaaatttgnnnnnn |
99 |
Q |
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| T |
812914 |
ttttatccctttcccccctcatgaaactatttaatggggtggtgcggttgtgcagagattgtttataattgactttcttagtaattcaattttttttttt |
812815 |
T |
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| Q |
100 |
ngtgtacttatggggtattatattgtattgttttgttttcatgagacatgctttaaaatgtattatgagatgtatgtaaaatttaattaattgtgcttct |
199 |
Q |
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| T |
812814 |
tgtgtacttatggggtattgtattgtattgttttgttttcatgagatatgctttaaaatgtattatgagatgtatgtaaaatttaattaattgtgcttct |
812715 |
T |
|
| Q |
200 |
taataagtagcagccctttagttgcaacggaagagcttgcttggatgcacaaaccagctaagataataatattccactagcaagagtgctcaggatatat |
299 |
Q |
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| T |
812714 |
taataagtagcagccctttagttgcaacggaagagcttgtttggatgcacaaaccagctaagataataatattccactagcaagagtgctcaggatatat |
812615 |
T |
|
| Q |
300 |
agggctatgtgtgatgtgatgtagagttccaaactactttacattgtaattaactttaatcgataatttgagattagactgttaagattacacatcagtt |
399 |
Q |
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| T |
812614 |
atatagttctatg-tgtgatgtagagttccaaactactttacattgtaattaattttaatcgataatttgagattagactgttaagattacacatcaatt |
812516 |
T |
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| Q |
400 |
ttagtgaagct |
410 |
Q |
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| T |
812515 |
ttagtgaagct |
812505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14305959 - 14306024
Alignment:
| Q |
1 |
ttttatccctttcccccttatgaaactatttaatggggtggtgcggttgtgtagagattgtttataat |
68 |
Q |
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|||||||||||| ||||| ||||||||| ||| ||||||||| ||||||| ||||||| |||||||| |
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| T |
14305959 |
ttttatcccttttcccctcatgaaactagttagtggggtggt--ggttgtgcagagattatttataat |
14306024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 14306468 - 14306516
Alignment:
| Q |
153 |
taaaatgtattatgagatgtatgtaaaatttaattaattgtgcttctta |
201 |
Q |
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||||||||||||||||||| || | ||||||||| |||||||||||||| |
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| T |
14306468 |
taaaatgtattatgagatggatatgaaatttaatcaattgtgcttctta |
14306516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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