View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_27 (Length: 410)
Name: NF20764_low_27
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 25728287 - 25728511
Alignment:
| Q |
14 |
agagatcaacggaagagacgatgcatggaatggatgaacggtaacgatcaagaatggttcttgtggcagcagttggggaagaacatgcatgttccagatg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25728287 |
agagatcaacggaagagacgatgcatggaatggatgaacggtaacgatcaagaatggttcttgtggcagcagtaggggaagaacatgcatgttccagatg |
25728386 |
T |
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| Q |
114 |
acctcgtgggaagtagtaaactttagagtgaatctttggaatcttgacgtcggggccggcacatatctgccacattttcgggtccacacgaggtggcaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
25728387 |
acctcgtgggaagtagtaaactttagagtgaatctttggaatcttgacgtcggggccggcgcatatctgccatattttggggtccacacgaggtggcaga |
25728486 |
T |
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| Q |
214 |
ggaagagacatggtggagatattgc |
238 |
Q |
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||||||||||||| |||| |||||| |
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| T |
25728487 |
ggaagagacatggcggagctattgc |
25728511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 25224961 - 25224737
Alignment:
| Q |
14 |
agagatcaacggaagagacgatgcatggaatggatgaacggtaacgatcaagaatggttcttgtggcagcagttggggaagaacatgcatgttccagatg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25224961 |
agagatcaacggaagagacgatgcatggaatggatgaacggtaacgatcaagaatggttcttgtggcagcagtaggggaagaacatgcatgttccagatg |
25224862 |
T |
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| Q |
114 |
acctcgtgggaagtagtaaactttagagtgaatctttggaatcttgacgtcggggccggcacatatctgccacattttcgggtccacacgaggtggcaga |
213 |
Q |
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| T |
25224861 |
acctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgacgtcggggccaacgcatatctgccatattttggggtccacacgaggtggcaga |
25224762 |
T |
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| Q |
214 |
ggaagagacatggtggagatattgc |
238 |
Q |
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|||||||||||||||||| |||||| |
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| T |
25224761 |
ggaagagacatggtggagctattgc |
25224737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 25289117 - 25288893
Alignment:
| Q |
14 |
agagatcaacggaagagacgatgcatggaatggatgaacggtaacgatcaagaatggttcttgtggcagcagttggggaagaacatgcatgttccagatg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25289117 |
agagatcaacggaagagacgatgcatggaatggatgaacggtaacgatcaagaatggttcttgtggcagcagtaggggaagaacatgcatgttccagatg |
25289018 |
T |
|
| Q |
114 |
acctcgtgggaagtagtaaactttagagtgaatctttggaatcttgacgtcggggccggcacatatctgccacattttcgggtccacacgaggtggcaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
25289017 |
acctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgacgtcggggccaacgcatatctgccatattttggggtccacacgaggtggcaga |
25288918 |
T |
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| Q |
214 |
ggaagagacatggtggagatattgc |
238 |
Q |
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|||||||||||||||||| |||||| |
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| T |
25288917 |
ggaagagacatggtggagctattgc |
25288893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 256 - 385
Target Start/End: Original strand, 25728551 - 25728680
Alignment:
| Q |
256 |
gagtattgttgggtgtatgaaagtgttagttataaaagtgaaaactgtgtgtgaagtagttagttacaaaatgcttaagtttatttatagtgtttcagtt |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25728551 |
gagtattgttgggtgtatgaaagtgttagttataaaagtgaaaactgtgtgtgaagtagttcgttacaaaatgcttaagtttatttatagtgtttcagtt |
25728650 |
T |
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| Q |
356 |
atagatgattgcagggattagcatgggcct |
385 |
Q |
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| T |
25728651 |
atagatgattgcatggattagcatgggcct |
25728680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 25224693 - 25224564
Alignment:
| Q |
256 |
gagtattgttgggtgtatgaaagtgttagttataaaagtgaaaactgtgtgtgaagtagttagttacaaaatgcttaagtttatttatagtgtttcagtt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
25224693 |
gagtattgttgggtgtatgaaagtgttagttataaaagtgaaaactgtgtgtgaagtagttagttacaaaattcttgagtttatttatagtgtttcagtt |
25224594 |
T |
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| Q |
356 |
atagatgattgcagggattagcatgggcct |
385 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
25224593 |
atagatgattgcatggattagcatgggcct |
25224564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 25288849 - 25288720
Alignment:
| Q |
256 |
gagtattgttgggtgtatgaaagtgttagttataaaagtgaaaactgtgtgtgaagtagttagttacaaaatgcttaagtttatttatagtgtttcagtt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
25288849 |
gagtattgttgggtgtatgaaagtgttagttataaaagtgaaaactgtgtgtgaagtagttagttacaaaattcttgagtttatttatagtgtttcagtt |
25288750 |
T |
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| Q |
356 |
atagatgattgcagggattagcatgggcct |
385 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
25288749 |
atagatgattgcatggattagcatgggcct |
25288720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 26099391 - 26099440
Alignment:
| Q |
112 |
tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac |
161 |
Q |
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|||||| |||||||||||||||||||||| || | ||| ||||||||||| |
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| T |
26099391 |
tgaccttgtgggaagtagtaaactttagaatgtagcttcggaatcttgac |
26099440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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