View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_low_31 (Length: 394)
Name: NF20764_low_31
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 34223917 - 34223557
Alignment:
| Q |
18 |
tgatttagctgaaaggatatatgtgatgtgatgtgatgcagggaggttatcaagatttgcggatgaaatagcaagggaagaaaaggcacaggtgtttgca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34223917 |
tgatttagctgaaaggatatatgtgatgtgatg-----cagggaggttatcaagatttgcggatgaaatagcaagggaagaaaaggcacaagtgtttgct |
34223823 |
T |
|
| Q |
118 |
ataagaattgattgttcagattcaagaagtgtaagagaagcatttgaaggtgtactttcacttggatttgttgaagttcttgtttataatgctaattatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34223822 |
ataagaattgattgttcagattcaagaagtgtaagagaagcatttgaaggtgtactttcacttggatttgttgaagttcttgtttataatgctaattatg |
34223723 |
T |
|
| Q |
218 |
agtcacctcttcaatccaaaccaactccttttcaacatctcccaatccaaactttccaaacttccctagctgtttcatccctcggtgccttcaactgcgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34223722 |
agtcacctcttcaatccaaaccaactccttttcaacatctcccaatccaaactttccaaacttccctagctgtttcatccctcggtgccttcaactgcgc |
34223623 |
T |
|
| Q |
318 |
tcaacaggtagttcgtctgctctgcgatccaacatatcaaatgtttctatgaagctaaataatgat |
383 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34223622 |
tcaacaggtagttcgtctactctgcgatccaacatatcaaatgtttctatgaagctaaataatgat |
34223557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University