View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_36 (Length: 367)
Name: NF20764_low_36
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 37606606 - 37606474
Alignment:
| Q |
204 |
cttttgcttgcatgcacaaagtgaatgtgtgt--cgaatccattaattcctttcttatttcagttgctcagtgtgaacagtaaaaataaactctcttgta |
301 |
Q |
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| T |
37606606 |
cttttgcttgcatgcacaaagtgaatgtgtgtgtcgaatccattaattcctttcttatttcagttgctcagtgtgaacagtaaaaataaactctcttgca |
37606507 |
T |
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| Q |
302 |
tacccacatatagatccttctccaaagatatat |
334 |
Q |
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| T |
37606506 |
tacccacatatagatccttctccaaagatatat |
37606474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 37606737 - 37606636
Alignment:
| Q |
103 |
aagtatttcattatcctgatttttcatacattattagcttcttcctccttctaaattttgtgactaaatttcttgtatt-aaaataggttcggaaacagc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37606737 |
aagtatttcattatcctgatttttcatacattattagcttcttcctccttctaaagtttgtgactaaatttcttgtattaaaaataggttcggaaacagc |
37606638 |
T |
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| Q |
202 |
ct |
203 |
Q |
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|| |
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| T |
37606637 |
ct |
37606636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 37600204 - 37600162
Alignment:
| Q |
292 |
ctctcttgtatacccacatatagatccttctccaaagatatat |
334 |
Q |
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| T |
37600204 |
ctctcttgtatactcacataaagatccttttccaaagatatat |
37600162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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