View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_39 (Length: 340)
Name: NF20764_low_39
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_39 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 31009870 - 31009531
Alignment:
| Q |
1 |
ttcctattccttcaaaagaataaacagccacacctaaaccatatnnnnnnncagataaaccaccaaaagtcttcaaaggtggcctattttccaaaaagac |
100 |
Q |
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| T |
31009870 |
ttcctattccttcaaaagaataaacagccacacctaaaccatatagaaaaacagataaaccaccaaaagtcttcaaaggtggcctattttccaaaaagac |
31009771 |
T |
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| Q |
101 |
aaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagccaaatgtgtcaaacttggaattgcattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009770 |
aaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagccaaatgtgtcaaacttggaattgcattc |
31009671 |
T |
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| Q |
201 |
aaacccaattgaaaagggaaacaagcccaaatnnnnnnnncctttggtgaaaaacccaataaagatgatgagtttgtattatgactaagatgtatcaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31009670 |
aaacccaattgaaaagggaaacaagcccaaataaaaaaaacctttggtgaaaaacccaataaagatgatgagtttgtattgtgactaagatgtatcaaag |
31009571 |
T |
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| Q |
301 |
tagtggaaataaaaataaggtagctaacacaaaaaccaca |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
31009570 |
tagtggaaataaaaataaggtagctaacacaaaaaccaca |
31009531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 9782909 - 9783041
Alignment:
| Q |
99 |
acaaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagccaaatgtgtcaaacttggaattgcat |
198 |
Q |
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||||||||||| |||||||| ||||| | | |||| || |||||||||||||||||| ||||||||||| || ||||| |||||| || || | || |
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| T |
9782909 |
acaaaaacatcttcaaccataacaacactcttagcagaaatatcaacaacatcagcaaaaatactcaaaggggctaaatgggtcaaagttttgatcgaat |
9783008 |
T |
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| Q |
199 |
tcaaacccaattgaaaagggaaacaagcccaaa |
231 |
Q |
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|||| || |||||||| || |||||| |||||| |
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| T |
9783009 |
tcaaccctaattgaaatggaaaacaaccccaaa |
9783041 |
T |
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