View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_low_41 (Length: 332)
Name: NF20764_low_41
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 25788526 - 25788211
Alignment:
| Q |
1 |
aggcctaatgtatttaaactctgcagcctctgaatcatgtcaagccgcattgtgccattggtcaagccgcatccca-caaattattgtgcaacagcgata |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25788526 |
aggcctaatgtatttaaactctgcagcctctgaatcatgtcaagccgcattgtgccattgttcaagccgcatcctgtcaaattattgtgcaacagcgata |
25788427 |
T |
|
| Q |
100 |
aatatcgaagttctttactcattctgaaagagggaagtgtaccaataaagttattgaatgataagtctaaatgaacaattacagtatattgtcaaatcct |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25788426 |
aatatcgaagttctttactcattctgaaagagggaagtgtagcaataaagttattgaatgataagtctaaatgaacaattacagtatactgtcaaatcct |
25788327 |
T |
|
| Q |
200 |
ttatatttttaaggcaaacaaacgaccacaagtgtaaaaccaataaactaaagtttggattcactttatgttgtaaagtaaaattttaagaaacgcggtt |
299 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25788326 |
ttata--tttaaggtaatcaaacgaccacaagtgtaaaaccaataaacaaaagtttggattcactttatgttgtaaagtaaaattttaagaaacgctgtt |
25788229 |
T |
|
| Q |
300 |
atcgtctatgttttgtag |
317 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25788228 |
atcgtctatgttttgtag |
25788211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University