View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_42 (Length: 319)
Name: NF20764_low_42
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 116 - 312
Target Start/End: Complemental strand, 43385864 - 43385668
Alignment:
| Q |
116 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
215 |
Q |
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| T |
43385864 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
43385765 |
T |
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| Q |
216 |
tcgtattcgaccattgctaaattcagtactgagtttttaatggcttccaagttccaagtataggtgcatgcgttcatatttttacattttcatctca |
312 |
Q |
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| T |
43385764 |
tcgtattcgaccattgctaaattcggtactgagtttttaatggcttccaagttccaagtataggtgcatgcgttcatatttttacattttcatctca |
43385668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 43385972 - 43385911
Alignment:
| Q |
18 |
caatgaatggccacagcagaacccttcagcaacctcttcttccaattaatgctaagttaatc |
79 |
Q |
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| T |
43385972 |
caatgaatggccacagcagaacccttctgcaacctcttcttccaattaatgctaagttaatc |
43385911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 116 - 265
Target Start/End: Complemental strand, 8775288 - 8775141
Alignment:
| Q |
116 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
215 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8775288 |
gctagctgctcttaataaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcagagttattttctgctaaaca |
8775189 |
T |
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| Q |
216 |
tcgtattcgaccattgctaaattcagtactgagtttttaatggcttccaa |
265 |
Q |
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| T |
8775188 |
ttgtatctgtccattgct--attcggtactgagtttttaaaggcttccaa |
8775141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 8775376 - 8775319
Alignment:
| Q |
22 |
gaatggccacagcagaacccttcagcaacctcttcttccaattaatgctaagttaatc |
79 |
Q |
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|||||||| | |||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8775376 |
gaatggccgctgcagcacccttctgcaacctcttcttccaattaatgctaagttaatc |
8775319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 1692084 - 1692231
Alignment:
| Q |
116 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
215 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1692084 |
gctaactgctcttaataaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcacagttattttctgctaaaca |
1692183 |
T |
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| Q |
216 |
tcgtattcgaccattgctaaattcagtactgagtttttaatggcttccaa |
265 |
Q |
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| |||| | |||||||| ||| ||||||||||||||| ||||||||| |
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| T |
1692184 |
ttgtatctgtccattgct--atttggtactgagtttttaaaggcttccaa |
1692231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 1691992 - 1692053
Alignment:
| Q |
18 |
caatgaatggccacagcagaacccttcagcaacctcttcttccaattaatgctaagttaatc |
79 |
Q |
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|||||||||||| | |||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1691992 |
caatgaatggccgctgcagcacccttctgcaacctcttcttccaattaatgctaagttaatc |
1692053 |
T |
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