View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_43 (Length: 317)
Name: NF20764_low_43
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 1702053 - 1702342
Alignment:
| Q |
20 |
actcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatata |
119 |
Q |
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| T |
1702053 |
actcaagccatatcttaactctcatggtatatctcactatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatata |
1702152 |
T |
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| Q |
120 |
gtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgacaa |
219 |
Q |
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| T |
1702153 |
gtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgccaa |
1702252 |
T |
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| Q |
220 |
caacacatcttaaaaacaaatgtcctaatgaaattctgtttggttccactcctaattatcttaatcttggagtctttggatatctgtgct |
309 |
Q |
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| T |
1702253 |
caacacatcttaaaaacaaatgtcctcatgaaattctgtttggttccactcctaattatcttaatcttcgagtctttggatgtctgtgct |
1702342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 5400832 - 5400962
Alignment:
| Q |
63 |
agcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccac |
162 |
Q |
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| T |
5400832 |
agcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctc |
5400931 |
T |
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| Q |
163 |
aaaaattctggtgttatgccttccaaatggc |
193 |
Q |
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| T |
5400932 |
aaacattctggtgttatgcttttcaaatggc |
5400962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 193
Target Start/End: Original strand, 3541807 - 3541937
Alignment:
| Q |
63 |
agcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccac |
162 |
Q |
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| T |
3541807 |
agcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctc |
3541906 |
T |
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| Q |
163 |
aaaaattctggtgttatgccttccaaatggc |
193 |
Q |
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| T |
3541907 |
aaacattctggtgttatgcttttcaaatggc |
3541937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 26592339 - 26592278
Alignment:
| Q |
66 |
ccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaac |
127 |
Q |
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| T |
26592339 |
ccaccttacactcctgaacatattggcattgcagaacgcaaacattgccatatagtcgaaac |
26592278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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