View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_45 (Length: 313)
Name: NF20764_low_45
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 313
Target Start/End: Original strand, 4275375 - 4275659
Alignment:
| Q |
30 |
aagacagaacaagctacaagaacaaaagactgtagtagtggtagtgaaagttatatgttggttaaaaaccaataaaaaataacacaaactgaataaaggg |
129 |
Q |
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| T |
4275375 |
aagacagaacaagctacaagaacaaaagactgtagtagtggtagtgaaagttatatgttggttaaaaaccaataaaaaataacacaaactgaataaaggg |
4275474 |
T |
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| Q |
130 |
tattttaagactgtacggttatccctgtatttccgggg-gatgtctattctgtccccttctacttcatcaaatctcacacctatccttcccttcttagtt |
228 |
Q |
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| T |
4275475 |
tattttaagactgtacggttatccctgtatttccggggggatgtctattctgtccccttctacttcatcaaatctcacacctatccttcccttcttagtt |
4275574 |
T |
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| Q |
229 |
ggttttctttttctacaaacaaatgtttgatttaggtcatcatcttctgtttttaccactatggagattttgtttctttgaccat |
313 |
Q |
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| T |
4275575 |
ggttttctttttctacaaacaaatgtttgatttaggtcatcatcttctgtttttaccactatggagattttgtttctttgaccat |
4275659 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 34795068 - 34795002
Alignment:
| Q |
152 |
ccctgtatttccggg-ggatgtctattctgtccccttctacttcatcaaatctcacacctatccttc |
217 |
Q |
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| T |
34795068 |
ccctgtatttccgggcggatgtctattctgtccccttctatttcaccaaatctctcatatatccttc |
34795002 |
T |
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