View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_46 (Length: 309)
Name: NF20764_low_46
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 31753290 - 31753018
Alignment:
| Q |
19 |
aacataaacaccaattttgcagccaatttgcaaaagacatgccctagaattggcggcgatgacaatttagcaccatttgattctactccttcaagagttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31753290 |
aacataaacaccaattttgcagccaatttgcaaaagacatgccctagaattggcggcgatgacaatttagcaccatttgattctactccttcaagagttg |
31753191 |
T |
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| Q |
119 |
acacaaaatactataaggctttgttgcataaaaagggtctccttcattctgatcaagaacttttcaaaggtgatggttctcaaagtgatagattggtgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31753190 |
acacaaaatactataaggctttgttgcataaaaagggtctccttcattctgatcaagagcttttcaaaggtgatggttctcaaagtgatagattggtgca |
31753091 |
T |
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| Q |
219 |
actttatagtaaacattctcatgcttttgcttatgattttggagtttctatgattaagatgggtaacataaag |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31753090 |
actttatagtaaacattctcatgcttttgcttatgattttggagtttctatgattaagatgggtaacataaag |
31753018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 26 - 285
Target Start/End: Complemental strand, 31767648 - 31767389
Alignment:
| Q |
26 |
acaccaattttgcagccaatttgcaaaagacatgccctagaattggcggcgatgacaatttagcaccatttgattctactccttcaagagttgacacaaa |
125 |
Q |
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||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31767648 |
acaccaactttgctgccaatttgcaaaagacatgccctaaaatcggcggcgatgacaatctagcaccatttgattctactccttcaagagttgacacaaa |
31767549 |
T |
|
| Q |
126 |
atactataaggctttgttgcataaaaagggtctccttcattctgatcaagaacttttcaaaggtgatggttctcaaagtgatagattggtgcaactttat |
225 |
Q |
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||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31767548 |
atactataaggctttgttgaataaacaaggtctccttcattctgatcaagagcttttcaaaggtgatggttctcaaagtgatagattggttcaactttat |
31767449 |
T |
|
| Q |
226 |
agtaaacattctcatgcttttgcttatgattttggagtttctatgattaagatgggtaac |
285 |
Q |
| |
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|||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31767448 |
agtaaaaattcttatgcttttgcatatgattttggagtttctatgattaagatgggtaac |
31767389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 31760902 - 31760636
Alignment:
| Q |
19 |
aacataaacaccaattttgcagccaatttgcaaaagacatgccctagaattggcggcgatgacaatttagcaccatttgattctactccttcaagagttg |
118 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||||||||| ||| | ||||| |
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| T |
31760902 |
aacatagacaccaattttgctgccaatttgcaaaagacatgccctaaaatcggcggcgacgataatttagcaccatttgattctacacctaacaaagttg |
31760803 |
T |
|
| Q |
119 |
acacaaaatactataaggctttgttgcataaaaagggtctccttcattctgatcaagaacttttcaaaggtgatggttctcaaagtgatagattggtgca |
218 |
Q |
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||||| ||| ||||||||||||||| |||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |
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| T |
31760802 |
acacatcatattataaggctttgttgtataaaaggggtcttcttcattctgatcaagagctttttaaaggtgatggttctcaaagtgatagattggttca |
31760703 |
T |
|
| Q |
219 |
actttatagtaaacattctcatgcttttgcttatgattttggagtttctatgattaagatgggtaac |
285 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31760702 |
actttatagtaaaaattcttatgcttttgcttatgattttggagtttctatgattaagatgggtaac |
31760636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 34 - 284
Target Start/End: Original strand, 31749829 - 31750079
Alignment:
| Q |
34 |
tttgcagccaatttgcaaaagacatgccctagaattggcggcgatgacaatttagcaccatttgattctactccttcaagagttgacacaaaatactata |
133 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||| |||||||| | |||||||| |||||||||||||||||| | |||||||||| || |||| |
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| T |
31749829 |
tttgcagccaatttgcaaaagacatgtcctcaaatcggcggcgacaataatttagcgccatttgattctactcctaacaaagttgacacatcattttata |
31749928 |
T |
|
| Q |
134 |
aggctttgttgcataaaaagggtctccttcattctgatcaagaacttttcaaaggtgatggttctcaaagtgatagattggtgcaactttatagtaaaca |
233 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| | |
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| T |
31749929 |
aggctttgttgtataaaaggggtctccttcattctgattaagagctttttaaaggtgatggttctcaaagtgataggttggtgcaactatatagtaaaaa |
31750028 |
T |
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| Q |
234 |
ttctcatgcttttgcttatgattttggagtttctatgattaagatgggtaa |
284 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31750029 |
ttcttatgcttttgcttatgattttggagtttctatgattaagatgggtaa |
31750079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 22433671 - 22433574
Alignment:
| Q |
79 |
gacaatttagcaccatttgattctactccttcaagagttgacacaaaatactataaggctttgttgcataaaaagggtctccttcattctgatcaaga |
176 |
Q |
| |
|
|||||| || |||| ||| |||||| || || ||| | |||||||||||| ||||| |||||| ||||||||||| | ||| |||||||||||||||| |
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| T |
22433671 |
gacaatgtaacacctttttattctattctttaaagggctgacacaaaatattataaagctttgctgcataaaaagtgcctctttcattctgatcaaga |
22433574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 31857726 - 31857763
Alignment:
| Q |
148 |
aaaaagggtctccttcattctgatcaagaacttttcaa |
185 |
Q |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
31857726 |
aaaaagggactccttcattctgatcaagagcttttcaa |
31857763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 29251379 - 29251475
Alignment:
| Q |
80 |
acaatttagcaccatttgattctactccttcaagagttgacacaaaatactataaggctttgttgcataaaaagggtctccttcattctgatcaaga |
176 |
Q |
| |
|
||||| ||||||| ||| ||||||||| || ||| | ||||||||| | ||||| |||||| ||||||||||| || |||||||||||||||| |
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| T |
29251379 |
acaatgtagcacctttttattctactctttaaagggctgacacaaagcattataaagctttgctgcataaaaagtacatctttcattctgatcaaga |
29251475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 246
Target Start/End: Original strand, 14450520 - 14450554
Alignment:
| Q |
212 |
tggtgcaactttatagtaaacattctcatgctttt |
246 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
14450520 |
tggtgcaactatatagtaaacattctcatgctttt |
14450554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 3931415 - 3931513
Alignment:
| Q |
79 |
gacaatttagcaccatttgattctactccttcaagagttgacacaaaatactataaggctttgttgcataaaaagggtctccttcattctgatcaagaa |
177 |
Q |
| |
|
|||||| ||||||| ||| ||||||||| || | | | ||||||||| | ||||| ||||| ||||||||||| ||||| |||| |||||||||||| |
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| T |
3931415 |
gacaatgtagcacctttttattctactctttaaggggctgacacaaagcattataaaactttgatgcataaaaagtgtctctttcactctgatcaagaa |
3931513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 291
Target Start/End: Original strand, 27888226 - 27888363
Alignment:
| Q |
154 |
ggtctccttcattctgatcaagaacttttcaaaggtgatggttctcaaagtgatagattggtgcaactttatagtaaacattctcatgcttttgcttatg |
253 |
Q |
| |
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|||||| | ||||||||||||||||| || || || ||||| | ||||||||| |||||| |||||||||||| | | || |||||||||| | |
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| T |
27888226 |
ggtctcttccattctgatcaagaactctttaagggagatggaagtgaaagtgatatgttggtggaactttatagtagagactcagatgcttttgcaagag |
27888325 |
T |
|
| Q |
254 |
attttggagtttctatgattaagatgggtaacataaag |
291 |
Q |
| |
|
||||| || ||| ||||||||||||||||| |||||| |
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|
| T |
27888326 |
attttaaagcttccatgattaagatgggtaatataaag |
27888363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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