View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_48 (Length: 304)
Name: NF20764_low_48
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_48 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 304
Target Start/End: Original strand, 38807943 - 38808244
Alignment:
| Q |
3 |
cagacacctcacttattcacattgaaaaagt-tgaattctacttaacgaaaaaagaagaagaagggtattttagatatttaaatgattttgtggggggta |
101 |
Q |
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| T |
38807943 |
cagacaccgcacttattcaccttgaaaaaaagtgaattctacttgacaaaaaaaaaaaaa-aagggtattttagatatttaaatgattttgtggggggta |
38808041 |
T |
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| Q |
102 |
ggaagcatagtagaggggtataatagagaactttcttcgtaaaactagactcacatttcgggtcaaaacgatccacgtgaagagagagttcatcttctcg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38808042 |
ggaagcatagtagaggggtataatagagaactttcttcgtaaaactagactcacatttcgggtcaaaacgatccacgtgaagaaagagttcatcttctcg |
38808141 |
T |
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| Q |
202 |
aacttcactgccctaatcgcaacatttcctcttcattttacatgaatttccactcataacattctcgctcagtaacaatggcgttgttattcaaggtaca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38808142 |
aacttcactgccctaatcgcaacatttcctcttcattttacatgaatttccactcataacattctcgctcagtaacaatggcgttgttattcaaggtaca |
38808241 |
T |
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| Q |
302 |
cta |
304 |
Q |
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||| |
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| T |
38808242 |
cta |
38808244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41998157 - 41998198
Alignment:
| Q |
1 |
cacagacacctcacttattcacattgaaaaagttgaattcta |
42 |
Q |
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| T |
41998157 |
cacagacaccccacttattcacattgaaaaaggcgaattcta |
41998198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 7476473 - 7476437
Alignment:
| Q |
4 |
agacacctcacttattcacattgaaaaagttgaattc |
40 |
Q |
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| T |
7476473 |
agacacctcacttattcactttgaaaaagatgaattc |
7476437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 24039949 - 24039985
Alignment:
| Q |
6 |
acacctcacttattcacattgaaaaagttgaattcta |
42 |
Q |
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| T |
24039949 |
acacctcacttattcaccttgaaaaaggtgaattcta |
24039985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 54264993 - 54265029
Alignment:
| Q |
6 |
acacctcacttattcacattgaaaaagttgaattcta |
42 |
Q |
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| T |
54264993 |
acacctcacttattcaccttgaaaaagatgaattcta |
54265029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 6054255 - 6054219
Alignment:
| Q |
6 |
acacctcacttattcacattgaaaaagttgaattcta |
42 |
Q |
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| T |
6054255 |
acacctcacttattcaccttgaaaaaggtgaattcta |
6054219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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