View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_51 (Length: 299)
Name: NF20764_low_51
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 49407496 - 49407766
Alignment:
| Q |
1 |
gaaaaatcaagatataaagctttaatgcattgaaataatattattttaaccacaacaattaattgctggttttggtccaaaattccaaacggaatacaaa |
100 |
Q |
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| T |
49407496 |
gaaaaatctagatataaagctttaatgcattgaaataatattattttaaccacaacaattaattgctggttttggtccaaaattccaaacggaatacaaa |
49407595 |
T |
|
| Q |
101 |
atatagttaagcaaaacatatagacagcaatggcaactaaataagtttaactaaaaatagcactacatgcttgtaagttaaactaaaaatagctttaata |
200 |
Q |
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| T |
49407596 |
atatagttaagcaaaacatatagacagcaatggcaactaaataagtttaactaaaaatagcactatatgcttgtaagttaaactaaaaatagctttaatg |
49407695 |
T |
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| Q |
201 |
ccttgtaagattggatatttaatatttataaaaattgaaagagtgaaaccctagaggatttgagttcatgt |
271 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |
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| T |
49407696 |
ccttgtaagattggatatttaatatttataaaaactgaaagagtgaaaacctagaggaattgagttcatgt |
49407766 |
T |
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