View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_52 (Length: 299)
Name: NF20764_low_52
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 54535574 - 54535857
Alignment:
| Q |
20 |
atggatatttaattacacgtaggtacattatgtaatactccctagtttgaattttgaagaatcaaaattgaagtattatgtgtaagtgtttagatatatc |
119 |
Q |
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| T |
54535574 |
atggatatttaattacacgtaggtacattatgtaatactccctagtttgaattttgaagaatcaaaattgaagtattatgtgtaagtgtttagatatatc |
54535673 |
T |
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| Q |
120 |
aata------cagacatttaaacaaagggggacacttgggtcttcaaactt----------gacatgtagttagatcatagtaattgactacatataatt |
203 |
Q |
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| T |
54535674 |
aatatcaatacagacatttaaacaaagtgggacacttgggtcttcaaactttcagtatcatgacatgtagttagatcatagtaattgactacatataatt |
54535773 |
T |
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| Q |
204 |
tttgttttgagtgatgctatattatcaagcgaatgagtaattcgagagagacttgctatgtgtacagcgaagcatgacatggca |
287 |
Q |
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| T |
54535774 |
tttgttttgagtgatgctatattatcaagcgaatgagtaattcgagagagacttgctatgtgtacagcgaagcatgacatggca |
54535857 |
T |
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