View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_low_53 (Length: 298)

Name: NF20764_low_53
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_low_53
NF20764_low_53
[»] chr3 (4 HSPs)
chr3 (1-298)||(33328154-33328453)
chr3 (71-151)||(36326512-36326593)
chr3 (63-136)||(30912069-30912142)
chr3 (101-151)||(14029379-14029430)
[»] chr6 (6 HSPs)
chr6 (63-199)||(4834733-4834865)
chr6 (68-199)||(7415658-7415785)
chr6 (68-151)||(7422666-7422750)
chr6 (63-139)||(33242862-33242938)
chr6 (100-238)||(13886592-13886724)
chr6 (68-143)||(7426605-7426680)
[»] chr7 (3 HSPs)
chr7 (63-151)||(42513109-42513198)
chr7 (78-151)||(11206500-11206574)
chr7 (71-151)||(49017149-49017230)
[»] chr5 (3 HSPs)
chr5 (63-144)||(8123542-8123623)
chr5 (72-151)||(41709523-41709603)
chr5 (71-134)||(24108720-24108783)
[»] chr1 (2 HSPs)
chr1 (63-139)||(18583946-18584022)
chr1 (62-151)||(23405522-23405612)
[»] chr8 (3 HSPs)
chr8 (62-238)||(44761980-44762150)
chr8 (78-139)||(14276621-14276683)
chr8 (62-151)||(44765287-44765377)
[»] chr4 (2 HSPs)
chr4 (78-139)||(24733645-24733706)
chr4 (71-139)||(55322394-55322463)
[»] chr2 (1 HSPs)
chr2 (62-139)||(45327464-45327541)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 33328154 - 33328453
Alignment:
Q  1 gatctatcaggtatattctattggttagttactaattgctattgt--gtagccattgaacaaatgtatgcataagtctgtataagcattgtatgctttat 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33328154 gatctatcaggtatattctattggttagttactaattgctattgtacgtagccattgaacaaatgtatgcataagtctgtataagcattgtatgctttat 33328253  T
Q  99 aattagaatcaatgaaagatataatcaatttcctttcttttttcttagtttctttctataaattcaattctggagtgggattcctactcaaattggatcg 198  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||    
T  33328254 aattagaaccaatgaaagatataatcaatttcctttcttttttcttagtttctttctataaattcaattatggtgtgggatccctactcgaattggatcg 33328353  T
Q  199 tcgtattatttggttctttcatttagatctcattcccgctgaatggggttatcaattgagctctcactcttcgacagaaaagaagatgcatacgcgtgga 298  Q
    | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  33328354 ttgtattagttggtgctttcatttagatctcattcccgctgaatggggttatcaattgagctctcactattcgacagaaaagaagatgcatatgcgtgga 33328453  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 36326512 - 36326593
Alignment:
Q  71 aagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 151  Q
    |||||| ||||||||||||||||||||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  36326512 aagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 36326593  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 30912069 - 30912142
Alignment:
Q  63 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttct 136  Q
    ||||||| |||||| |||||| ||||||||| |||| || ||||||||||||| ||||||| ||||| ||||||    
T  30912069 gtatgcacaagtctatataagtattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttct 30912142  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 14029379 - 14029430
Alignment:
Q  101 ttagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 151  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||    
T  14029379 ttagaatcaatgaaaaatataatgaatttcctttcttttatctctagtttct 14029430  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 4834733 - 4834865
Alignment:
Q  63 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaat 161  Q
    |||||||||||||| |||||||||||||||| | || |||||||||||||||| ||||||| ||||| |||||| |||||| ||||||||  || ||       
T  4834733 gtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctcta--- 4834829  T
Q  162 tcaattctggagtgggattcctactcaaattggatcgt 199  Q
      |||||||||||| ||| |||||||||||||| ||||    
T  4834830 --aattctggagtgtgatccctactcaaattgggtcgt 4834865  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 7415658 - 7415785
Alignment:
Q  68 cataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaattcaat 166  Q
    ||||||||| |||||||||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| |||||||| ||| ||     | |    
T  7415658 cataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctctctcta-----att 7415752  T
Q  167 tctggagtgggattcctactcaaattggatcgt 199  Q
    ||||||||| ||| ||||||||| |||||||||    
T  7415753 tctggagtgtgatccctactcaagttggatcgt 7415785  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 7422666 - 7422750
Alignment:
Q  68 cataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 151  Q
    ||||||||| |||||||||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  7422666 cataagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 7422750  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 33242862 - 33242938
Alignment:
Q  63 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 139  Q
    ||||||| |||||| |||||||||||||||| |||| || ||||||||||||| ||||||| |||||| ||||||||    
T  33242862 gtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataatgaatttcttttctttt 33242938  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 13886592 - 13886724
Alignment:
Q  100 attagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaattcaattctggagtgggattcctactcaaattggatcg 198  Q
    |||||||||||||||| ||||||| ||||| |||||| |||||| ||||||||  || ||     |||||||||||| ||| ||||||||||||||   |    
T  13886592 attagaatcaatgaaaaatataatgaattttctttctcttttctctagtttctccctcta-----aattctggagtgtgatccctactcaaattgg---g 13886683  T
Q  199 tcgtattatttggttctttcatt-tagatctcattcccgct 238  Q
    |||||| ||||||| |||||||| | |||||||||||||||    
T  13886684 tcgtatcatttggtgctttcattctcgatctcattcccgct 13886724  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 7426605 - 7426680
Alignment:
Q  68 cataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct 143  Q
    ||||||||| ||||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| ||||||    
T  7426605 cataagtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttct 7426680  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 42513198 - 42513109
Alignment:
Q  63 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 151  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  42513198 gtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 42513109  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 11206500 - 11206574
Alignment:
Q  78 tataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 151  Q
    ||||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  11206500 tataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 11206574  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 49017149 - 49017230
Alignment:
Q  71 aagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 151  Q
    |||| |||||||||||||||||| |||| || ||| | ||||||| |||||||  |||| ||||||||| ||| ||||||||    
T  49017149 aagtttgtataagcattgtatgccttattatgagacttaatgaaaaatataatatattttctttcttttatctctagtttct 49017230  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 8123542 - 8123623
Alignment:
Q  63 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttctt 144  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||||||| ||||| |||||| |||||||    
T  8123542 gtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataatgaattttctttctcttttctt 8123623  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 41709523 - 41709603
Alignment:
Q  72 agtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 151  Q
    ||||| ||||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  41709523 agtctatataaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctatagtttct 41709603  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 24108720 - 24108783
Alignment:
Q  71 aagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttccttt 134  Q
    |||||| |||||||||||||||  |||| ||||||| |||||||| ||||||| ||||||||||    
T  24108720 aagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttt 24108783  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 18584022 - 18583946
Alignment:
Q  63 gtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 139  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||| ||||| | |||||||||||||||    
T  18584022 gtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatatactgaatttcctttctttt 18583946  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 23405612 - 23405522
Alignment:
Q  62 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 151  Q
    |||||||| |||||| | ||| |||||||||| |||| || ||||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  23405612 tgtatgcacaagtctatctaaacattgtatgccttattatgagaatcaatgaaaaatataatgaattttctttctcttttctctagtttct 23405522  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 44761980 - 44762150
Alignment:
Q  62 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttctttctataaa 160  Q
    |||||||| |||||| ||||| |||||||||| |||| || | ||||||||||| ||||||| |||||  ||||| |||||| ||||||||  || ||      
T  44761980 tgtatgcacaagtctatataaacattgtatgccttattatgaaaatcaatgaaaaatataatgaattttttttctcttttctatagtttctccctcta-- 44762077  T
Q  161 ttcaattctggagtgggattcctactcaaattggatcgtcgtattatttggttctttcatt-tagatctcattcccgct 238  Q
       |||||||||||| ||| ||||||| ||||||   ||||||| ||||||| |||||||| | |||||||||||||||    
T  44762078 ---aattctggagtgtgatccctactcgaattgg---gtcgtatcatttggtgctttcattctcgatctcattcccgct 44762150  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 14276683 - 14276621
Alignment:
Q  78 tataagcattgta-tgctttataattagaatcaatgaaagatataatcaatttcctttctttt 139  Q
    ||||||||||||| ||||| || |||| ||||||||||| |||||||||||||||||||||||    
T  14276683 tataagcattgtaatgcttcatgattaaaatcaatgaaaaatataatcaatttcctttctttt 14276621  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 44765287 - 44765377
Alignment:
Q  62 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttcttttttct-tagtttct 151  Q
    |||||||| |||||| ||||| |||||||| | |||| || | ||||||||||| ||||||| ||||| |||||| |||||| ||||||||    
T  44765287 tgtatgcacaagtctatataaacattgtattccttattatgaaaatcaatgaaaaatataatgaattttctttctcttttctatagtttct 44765377  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 24733645 - 24733706
Alignment:
Q  78 tataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 139  Q
    ||||||||||||||| || || |||||||  ||||||| ||||||| |||||||||||||||    
T  24733645 tataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttctttt 24733706  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 55322463 - 55322394
Alignment:
Q  71 aagtctgtataagcattgtatgctttataattagaatcaatgaaagat-ataatcaatttcctttctttt 139  Q
    |||||| |||||||||||||||| | || ||||| || ||||||| || ||||| |||||||||||||||    
T  55322463 aagtctatataagcattgtatgcctcattattaggatgaatgaaaaataataatgaatttcctttctttt 55322394  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 45327541 - 45327464
Alignment:
Q  62 tgtatgcataagtctgtataagcattgtatgctttataattagaatcaatgaaagatataatcaatttcctttctttt 139  Q
    |||||||| |||||| |||||||||||||||  |||| || ||||  ||||||| ||||||| |||||| ||||||||    
T  45327541 tgtatgcacaagtctatataagcattgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttttctttt 45327464  T

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