View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_low_6 (Length: 632)
Name: NF20764_low_6
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_6 |
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| [»] scaffold0710 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 19 - 621
Target Start/End: Original strand, 51772010 - 51772612
Alignment:
| Q |
19 |
gaaaatcgatctgtatttatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgat |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772010 |
gaaaatcgatctgtattgatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgat |
51772109 |
T |
|
| Q |
119 |
agtctctcacaaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttccaattgttattgcatatatagtttatgaagtccatgcctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51772110 |
agtctctcacaaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttccaattgttattgcatatatagtttatgaagtccatgcctt |
51772209 |
T |
|
| Q |
219 |
ttgtctgcaatatctatatcagtttatgaactcctcatatagtcatttactcgatcgtttctaatcctattatatataattcttaaatttcagtaagact |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772210 |
ttgtctgcaatatctatatcagtttatgaactcctcgtatagtcatttactcgatcgtttctaatcctattatatataattcttaaatttcagtaagact |
51772309 |
T |
|
| Q |
319 |
tagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51772310 |
tagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagt |
51772409 |
T |
|
| Q |
419 |
gtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaatgagaaggttg |
518 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
51772410 |
gtgagtgaggacgagagcctgttgaaaatttcgcagtgttatctatccaccacatctggccctctagccggtctcctcttcatctccaatgagaaggttg |
51772509 |
T |
|
| Q |
519 |
ccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcccagattaatatacacaaacctatt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772510 |
ccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcccagattaatatacacaaacctatt |
51772609 |
T |
|
| Q |
619 |
cat |
621 |
Q |
| |
|
||| |
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|
| T |
51772610 |
cat |
51772612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 276 - 591
Target Start/End: Original strand, 51780133 - 51780438
Alignment:
| Q |
276 |
tttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattct |
375 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | ||| || ||||||||||||||| ||||||| |
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|
| T |
51780133 |
tttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattct |
51780232 |
T |
|
| Q |
376 |
tcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatct |
475 |
Q |
| |
|
| |||||||||||||||| ||| | ||||||| |||||||||||||| ||| |||||||| |||| || |||||||| |||||||||||| |
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| T |
51780233 |
ttaagtgggtggagtggataaattttttatgcactattttagtgtgagagag----------tgttgaaagtttctcactgttatctttccaccacatct |
51780322 |
T |
|
| Q |
476 |
ggtcctctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtagga |
575 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
51780323 |
ggccctctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaataaaagtctataatcagaaaggtcaaatgtgtagga |
51780422 |
T |
|
| Q |
576 |
tccgctataaggtaag |
591 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
51780423 |
tccgctataaggtaag |
51780438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 303 - 594
Target Start/End: Original strand, 51807869 - 51808160
Alignment:
| Q |
303 |
aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt |
402 |
Q |
| |
|
|||||||||| ||| || |||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
51807869 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
51807968 |
T |
|
| Q |
403 |
tatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatc |
502 |
Q |
| |
|
|| || ||||||||||||| || | ||||| || | ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51807969 |
tacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcacagtgttatctatccaccacatctggtcctctagctggtctgctcttcatc |
51808068 |
T |
|
| Q |
503 |
tccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcc |
594 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
51808069 |
tccaatgaaaaggttgccttctgcagtgagagatcaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcc |
51808160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 321 - 593
Target Start/End: Original strand, 51803934 - 51804206
Alignment:
| Q |
321 |
gagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtttatgcggtattttagtgt |
420 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| | |||| |||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||| |
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|
| T |
51803934 |
gagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaattcttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgt |
51804033 |
T |
|
| Q |
421 |
gagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaatgagaaggttgcc |
520 |
Q |
| |
|
||| || | ||||| || | ||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||| |
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|
| T |
51804034 |
gagagaaggagagaggctatcaaaagtttcgcagtgttatctttccaccacatccggtcctctatctggtctcctcttcatctccaatgaaaaggtggcc |
51804133 |
T |
|
| Q |
521 |
ttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc |
593 |
Q |
| |
|
|| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51804134 |
ttctgcagtgagagaacaataaaagtcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc |
51804206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 51807605 - 51807751
Alignment:
| Q |
31 |
gtatttatggttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagtctctcacaa |
130 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
51807605 |
gtattgatggttttaccaacatagagtgcttt--attgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaa |
51807702 |
T |
|
| Q |
131 |
aaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttcc |
179 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
51807703 |
agagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcc |
51807751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 51779914 - 51780046
Alignment:
| Q |
40 |
gttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctaga----aaggctgatagtctctcacaaaaagt |
135 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51779914 |
gttttaccaatatagagtgcttt--attgtttcaggtttaacaaattcaaacaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagt |
51780011 |
T |
|
| Q |
136 |
ccaagaacatg----gtgagtacccttgtaagact |
166 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
51780012 |
ccaagaacatggtgagtgagtacccttgtaagact |
51780046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 51803796 - 51803852
Alignment:
| Q |
110 |
aaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgtaagact |
166 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||| |
|
|
| T |
51803796 |
aaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagact |
51803852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 540
Target Start/End: Complemental strand, 12196221 - 12196136
Alignment:
| Q |
455 |
tgttatctatccaccacatctggtcctctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaat |
540 |
Q |
| |
|
||||||||||| || ||||||||||||||||| || || |||||||| || | | | || |||||||||| ||||| |||||||| |
|
|
| T |
12196221 |
tgttatctatcaacaacatctggtcctctagcaggcctactcttcatatcaactaataaaattgccttttgtagtgagagatcaat |
12196136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 51761423 - 51761472
Alignment:
| Q |
431 |
gagagtctgttgaaaatttcgcagtgttatctatccaccacatctggtcc |
480 |
Q |
| |
|
||||| ||||||||| |||| || |||||||| ||||||||||||||||| |
|
|
| T |
51761423 |
gagaggctgttgaaagtttcacactgttatctgtccaccacatctggtcc |
51761472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 276 - 591
Target Start/End: Original strand, 6775 - 7082
Alignment:
| Q |
276 |
tttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattct |
375 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||| | ||| || ||||||||||||||| ||||||| |
|
|
| T |
6775 |
tttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattct |
6874 |
T |
|
| Q |
376 |
tcaagtgggtggagtggagaaagtgtttatgcggtattttagtgtgagtgaggacgagagtctgttgaaaatttcgcagtgttatctatccaccacatct |
475 |
Q |
| |
|
| |||||||||||||||| ||| | ||||||| |||||||||||||| ||| |||||||| |||| || |||||||| |||||||||||| |
|
|
| T |
6875 |
ttaagtgggtggagtggataaattttttatgcactattttagtgtgagagag----------tgttgaaagtttctcactgttatctttccaccacatct |
6964 |
T |
|
| Q |
476 |
ggtcct--ctagctggtctcctcttcatctccaatgagaaggttgccttttgcagtgacagatcaataaaagtctttaatcagaaaggtcaaatgcgtag |
573 |
Q |
| |
|
|| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
6965 |
ggcccctcctagctggcctcctcttcatctccaatgaaaaggttgccttttgcagtgacagatcaataaaagtctataatcagaaaggtcaaatgtgtag |
7064 |
T |
|
| Q |
574 |
gatccgctataaggtaag |
591 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7065 |
gatccgctataaggtaag |
7082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 6556 - 6688
Alignment:
| Q |
40 |
gttttaccaatatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctaga----aaggctgatagtctctcacaaaaagt |
135 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6556 |
gttttaccaatatagagtgcttt--attgtttcaggtttaacaaattcaaacaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagt |
6653 |
T |
|
| Q |
136 |
ccaagaacatg----gtgagtacccttgtaagact |
166 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
6654 |
ccaagaacatggtgagtgagtacccttgtaagact |
6688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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